Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf87 (chromosome 1 open reading frame 87)

Identity

Alias (NCBI)CREF
HGNC (Hugo) C1orf87
HGNC Alias symbMGC34837
CREF
HGNC Alias namecarcinoma-related EF-hand protein
LocusID (NCBI) 127795
Atlas_Id 61094
Location 1p32.1  [Link to chromosome band 1p32]
Location_base_pair Starts at 59990394 and ends at 60073770 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANP32A (15q23) / C1orf87 (1p32.1)ASH1L (1q22) / C1orf87 (1p32.1)OSBPL9 (1p32.3) / C1orf87 (1p32.1)
OSBPL9 C1orf87ASH1L C1orf87

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C1orf87   28547
Cards
Entrez_Gene (NCBI)C1orf87    chromosome 1 open reading frame 87
AliasesCREF
GeneCards (Weizmann)C1orf87
Ensembl hg19 (Hinxton)ENSG00000162598 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162598 [Gene_View]  ENSG00000162598 [Sequence]  chr1:59990394-60073770 [Contig_View]  C1orf87 [Vega]
ICGC DataPortalENSG00000162598
TCGA cBioPortalC1orf87
AceView (NCBI)C1orf87
Genatlas (Paris)C1orf87
SOURCE (Princeton)C1orf87
Genetics Home Reference (NIH)C1orf87
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf87  -     chr1:59990394-60073770 -  1p32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf87  -     1p32.1   [Description]    (hg19-Feb_2009)
GoldenPathC1orf87 - 1p32.1 [CytoView hg19]  C1orf87 - 1p32.1 [CytoView hg38]
ImmunoBaseENSG00000162598
Genome Data Viewer NCBIC1orf87 [Mapview hg19]  
OMIM618860   
Gene and transcription
Genbank (Entrez)AK124828 AK126061 BC027878 BC042203 CD707889
RefSeq transcript (Entrez)NM_152377
Consensus coding sequences : CCDS (NCBI)C1orf87
Gene ExpressionC1orf87 [ NCBI-GEO ]   C1orf87 [ EBI - ARRAY_EXPRESS ]   C1orf87 [ SEEK ]   C1orf87 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf87 [ Firebrowse - Broad ]
GenevisibleExpression of C1orf87 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127795
GTEX Portal (Tissue expression)C1orf87
Human Protein AtlasENSG00000162598-C1orf87 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0U7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0U7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0U7
PhosPhoSitePlusQ8N0U7
Domains : Interpro (EBI)DUF5580    EF-hand-dom_pair   
Domain families : Pfam (Sanger)DUF5580 (PF17743)   
Domain families : Pfam (NCBI)pfam17743   
Conserved Domain (NCBI)C1orf87
SuperfamilyQ8N0U7
AlphaFold pdb e-kbQ8N0U7   
Human Protein Atlas [tissue]ENSG00000162598-C1orf87 [tissue]
HPRD11338
Protein Interaction databases
DIP (DOE-UCLA)Q8N0U7
IntAct (EBI)Q8N0U7
BioGRIDC1orf87
STRING (EMBL)C1orf87
ZODIACC1orf87
Ontologies - Pathways
QuickGOQ8N0U7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf87
Atlas of Cancer Signalling NetworkC1orf87
Wikipedia pathwaysC1orf87
Orthology - Evolution
OrthoDB127795
GeneTree (enSembl)ENSG00000162598
Phylogenetic Trees/Animal Genes : TreeFamC1orf87
Homologs : HomoloGeneC1orf87
Homology/Alignments : Family Browser (UCSC)C1orf87
Gene fusions - Rearrangements
Fusion : QuiverC1orf87
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf87
dbVarC1orf87
ClinVarC1orf87
MonarchC1orf87
1000_GenomesC1orf87 
Exome Variant ServerC1orf87
GNOMAD BrowserENSG00000162598
Varsome BrowserC1orf87
ACMGC1orf87 variants
VarityQ8N0U7
Genomic Variants (DGV)C1orf87 [DGVbeta]
DECIPHERC1orf87 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf87 
Mutations
ICGC Data PortalC1orf87 
TCGA Data PortalC1orf87 
Broad Tumor PortalC1orf87
OASIS PortalC1orf87 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf87  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC1orf87
Mutations and Diseases : HGMDC1orf87
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC1orf87
DgiDB (Drug Gene Interaction Database)C1orf87
DoCM (Curated mutations)C1orf87
CIViC (Clinical Interpretations of Variants in Cancer)C1orf87
Cancer3DC1orf87
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618860   
Orphanet
DisGeNETC1orf87
MedgenC1orf87
Genetic Testing Registry C1orf87
NextProtQ8N0U7 [Medical]
GENETestsC1orf87
Target ValidationC1orf87
Huge Navigator C1orf87 [HugePedia]
ClinGenC1orf87
Clinical trials, drugs, therapy
MyCancerGenomeC1orf87
Protein Interactions : CTDC1orf87
Pharm GKB GenePA142672471
PharosQ8N0U7
Clinical trialC1orf87
Miscellaneous
canSAR (ICR)C1orf87
HarmonizomeC1orf87
DataMed IndexC1orf87
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC1orf87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:07 CEST 2021

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