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C1orf87 (chromosome 1 open reading frame 87)

Identity

Alias_symbol (synonym)MGC34837
CREF
Other alias
HGNC (Hugo) C1orf87
LocusID (NCBI) 127795
Atlas_Id 61094
Location 1p32.1  [Link to chromosome band 1p32]
Location_base_pair Starts at 59990394 and ends at 60073770 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANP32A (15q23) / C1orf87 (1p32.1)ASH1L (1q22) / C1orf87 (1p32.1)OSBPL9 (1p32.3) / C1orf87 (1p32.1)
OSBPL9 C1orf87ASH1L C1orf87

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf87   28547
Cards
Entrez_Gene (NCBI)C1orf87  127795  chromosome 1 open reading frame 87
AliasesCREF
GeneCards (Weizmann)C1orf87
Ensembl hg19 (Hinxton)ENSG00000162598 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162598 [Gene_View]  chr1:59990394-60073770 [Contig_View]  C1orf87 [Vega]
ICGC DataPortalENSG00000162598
TCGA cBioPortalC1orf87
AceView (NCBI)C1orf87
Genatlas (Paris)C1orf87
WikiGenes127795
SOURCE (Princeton)C1orf87
Genetics Home Reference (NIH)C1orf87
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf87  -     chr1:59990394-60073770 -  1p32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf87  -     1p32.1   [Description]    (hg19-Feb_2009)
EnsemblC1orf87 - 1p32.1 [CytoView hg19]  C1orf87 - 1p32.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf87 [Mapview hg19]  C1orf87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124828 AK126061 BC027878 BC042203 CD707889
RefSeq transcript (Entrez)NM_152377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf87
Cluster EST : UnigeneHs.47385 [ NCBI ]
CGAP (NCI)Hs.47385
Alternative Splicing GalleryENSG00000162598
Gene ExpressionC1orf87 [ NCBI-GEO ]   C1orf87 [ EBI - ARRAY_EXPRESS ]   C1orf87 [ SEEK ]   C1orf87 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127795
GTEX Portal (Tissue expression)C1orf87
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0U7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0U7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0U7
Splice isoforms : SwissVarQ8N0U7
PhosPhoSitePlusQ8N0U7
Domains : Interpro (EBI)EF-hand-dom_pair   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf87
DMDM Disease mutations127795
Blocks (Seattle)C1orf87
SuperfamilyQ8N0U7
Human Protein AtlasENSG00000162598
Peptide AtlasQ8N0U7
HPRD11338
IPIIPI00166078   IPI00844296   IPI00844359   IPI00640192   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0U7
IntAct (EBI)Q8N0U7
FunCoupENSG00000162598
BioGRIDC1orf87
STRING (EMBL)C1orf87
ZODIACC1orf87
Ontologies - Pathways
QuickGOQ8N0U7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf87
Atlas of Cancer Signalling NetworkC1orf87
Wikipedia pathwaysC1orf87
Orthology - Evolution
OrthoDB127795
GeneTree (enSembl)ENSG00000162598
Phylogenetic Trees/Animal Genes : TreeFamC1orf87
HOVERGENQ8N0U7
HOGENOMQ8N0U7
Homologs : HomoloGeneC1orf87
Homology/Alignments : Family Browser (UCSC)C1orf87
Gene fusions - Rearrangements
Fusion: TCGAOSBPL9 C1orf87
Fusion: TCGAASH1L C1orf87
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf87
dbVarC1orf87
ClinVarC1orf87
1000_GenomesC1orf87 
Exome Variant ServerC1orf87
ExAC (Exome Aggregation Consortium)C1orf87 (select the gene name)
Genetic variants : HAPMAP127795
Genomic Variants (DGV)C1orf87 [DGVbeta]
DECIPHERC1orf87 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf87 
Mutations
ICGC Data PortalC1orf87 
TCGA Data PortalC1orf87 
Broad Tumor PortalC1orf87
OASIS PortalC1orf87 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf87  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf87
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf87
DgiDB (Drug Gene Interaction Database)C1orf87
DoCM (Curated mutations)C1orf87 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf87 (select a term)
intoGenC1orf87
Cancer3DC1orf87(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf87
Genetic Testing Registry C1orf87
NextProtQ8N0U7 [Medical]
TSGene127795
GENETestsC1orf87
Target ValidationC1orf87
Huge Navigator C1orf87 [HugePedia]
snp3D : Map Gene to Disease127795
BioCentury BCIQC1orf87
ClinGenC1orf87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127795
Chemical/Pharm GKB GenePA142672471
Clinical trialC1orf87
Miscellaneous
canSAR (ICR)C1orf87 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf87
EVEXC1orf87
GoPubMedC1orf87
iHOPC1orf87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:07 CEST 2017

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