Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf94 (chromosome 1 open reading frame 94)

Identity

Alias_symbol (synonym)MGC15882
Other alias-
HGNC (Hugo) C1orf94
LocusID (NCBI) 84970
Atlas_Id 61095
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 34176952 and ends at 34219130 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf94   28250
Cards
Entrez_Gene (NCBI)C1orf94  84970  chromosome 1 open reading frame 94
Aliases
GeneCards (Weizmann)C1orf94
Ensembl hg19 (Hinxton)ENSG00000142698 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142698 [Gene_View]  chr1:34176952-34219130 [Contig_View]  C1orf94 [Vega]
ICGC DataPortalENSG00000142698
TCGA cBioPortalC1orf94
AceView (NCBI)C1orf94
Genatlas (Paris)C1orf94
WikiGenes84970
SOURCE (Princeton)C1orf94
Genetics Home Reference (NIH)C1orf94
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf94  -     chr1:34176952-34219130 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf94  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblC1orf94 - 1p35.1 [CytoView hg19]  C1orf94 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf94 [Mapview hg19]  C1orf94 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA725646 AK123355 AW117410 BC007637 BC064845
RefSeq transcript (Entrez)NM_001134734 NM_032884
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf94
Cluster EST : UnigeneHs.194610 [ NCBI ]
CGAP (NCI)Hs.194610
Alternative Splicing GalleryENSG00000142698
Gene ExpressionC1orf94 [ NCBI-GEO ]   C1orf94 [ EBI - ARRAY_EXPRESS ]   C1orf94 [ SEEK ]   C1orf94 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf94 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84970
GTEX Portal (Tissue expression)C1orf94
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1W5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1W5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1W5
Splice isoforms : SwissVarQ6P1W5
PhosPhoSitePlusQ6P1W5
Domains : Interpro (EBI)DUF4688   
Domain families : Pfam (Sanger)DUF4688 (PF15752)   
Domain families : Pfam (NCBI)pfam15752   
Conserved Domain (NCBI)C1orf94
DMDM Disease mutations84970
Blocks (Seattle)C1orf94
SuperfamilyQ6P1W5
Human Protein AtlasENSG00000142698
Peptide AtlasQ6P1W5
HPRD11310
IPIIPI00645901   IPI00913870   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1W5
IntAct (EBI)Q6P1W5
FunCoupENSG00000142698
BioGRIDC1orf94
STRING (EMBL)C1orf94
ZODIACC1orf94
Ontologies - Pathways
QuickGOQ6P1W5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf94
Atlas of Cancer Signalling NetworkC1orf94
Wikipedia pathwaysC1orf94
Orthology - Evolution
OrthoDB84970
GeneTree (enSembl)ENSG00000142698
Phylogenetic Trees/Animal Genes : TreeFamC1orf94
HOVERGENQ6P1W5
HOGENOMQ6P1W5
Homologs : HomoloGeneC1orf94
Homology/Alignments : Family Browser (UCSC)C1orf94
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf94 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf94
dbVarC1orf94
ClinVarC1orf94
1000_GenomesC1orf94 
Exome Variant ServerC1orf94
ExAC (Exome Aggregation Consortium)C1orf94 (select the gene name)
Genetic variants : HAPMAP84970
Genomic Variants (DGV)C1orf94 [DGVbeta]
DECIPHERC1orf94 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf94 
Mutations
ICGC Data PortalC1orf94 
TCGA Data PortalC1orf94 
Broad Tumor PortalC1orf94
OASIS PortalC1orf94 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf94  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf94
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf94
DgiDB (Drug Gene Interaction Database)C1orf94
DoCM (Curated mutations)C1orf94 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf94 (select a term)
intoGenC1orf94
Cancer3DC1orf94(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf94
Genetic Testing Registry C1orf94
NextProtQ6P1W5 [Medical]
TSGene84970
GENETestsC1orf94
Target ValidationC1orf94
Huge Navigator C1orf94 [HugePedia]
snp3D : Map Gene to Disease84970
BioCentury BCIQC1orf94
ClinGenC1orf94
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84970
Chemical/Pharm GKB GenePA142672478
Clinical trialC1orf94
Miscellaneous
canSAR (ICR)C1orf94 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf94
EVEXC1orf94
GoPubMedC1orf94
iHOPC1orf94
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:57 CEST 2017

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