Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf95 (chromosome 1 open reading frame 95)

Identity

Other alias-
HGNC (Hugo) C1orf95
LocusID (NCBI) 375057
Atlas_Id 61096
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 226736501 and ends at 226796915 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf95 (1q42.12) / VTI1A (10q25.2)CLASP1 (2q14.2) / C1orf95 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf95   30491
Cards
Entrez_Gene (NCBI)C1orf95  375057  chromosome 1 open reading frame 95
Aliases
GeneCards (Weizmann)C1orf95
Ensembl hg19 (Hinxton)ENSG00000203685 [Gene_View]  chr1:226736501-226796915 [Contig_View]  C1orf95 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203685 [Gene_View]  chr1:226736501-226796915 [Contig_View]  C1orf95 [Vega]
ICGC DataPortalENSG00000203685
TCGA cBioPortalC1orf95
AceView (NCBI)C1orf95
Genatlas (Paris)C1orf95
WikiGenes375057
SOURCE (Princeton)C1orf95
Genetics Home Reference (NIH)C1orf95
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf95  -     chr1:226736501-226796915 +  1q42.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf95  -     1q42.12   [Description]    (hg38-Dec_2013)
EnsemblC1orf95 - 1q42.12 [CytoView hg19]  C1orf95 - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBIC1orf95 [Mapview hg19]  C1orf95 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035308 AL134612 AL137507 AM393750 BC141659
RefSeq transcript (Entrez)NM_001003665
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)C1orf95
Cluster EST : UnigeneHs.116827 [ NCBI ]
CGAP (NCI)Hs.116827
Alternative Splicing GalleryENSG00000203685
Gene ExpressionC1orf95 [ NCBI-GEO ]   C1orf95 [ EBI - ARRAY_EXPRESS ]   C1orf95 [ SEEK ]   C1orf95 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf95 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375057
GTEX Portal (Tissue expression)C1orf95
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YW2
Splice isoforms : SwissVarQ69YW2
PhosPhoSitePlusQ69YW2
Domains : Interpro (EBI)SPEC3/C1orf95   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf95
DMDM Disease mutations375057
Blocks (Seattle)C1orf95
SuperfamilyQ69YW2
Human Protein AtlasENSG00000203685
Peptide AtlasQ69YW2
HPRD16821
IPIIPI00402088   IPI00873138   
Protein Interaction databases
DIP (DOE-UCLA)Q69YW2
IntAct (EBI)Q69YW2
FunCoupENSG00000203685
BioGRIDC1orf95
STRING (EMBL)C1orf95
ZODIACC1orf95
Ontologies - Pathways
QuickGOQ69YW2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf95
Atlas of Cancer Signalling NetworkC1orf95
Wikipedia pathwaysC1orf95
Orthology - Evolution
OrthoDB375057
GeneTree (enSembl)ENSG00000203685
Phylogenetic Trees/Animal Genes : TreeFamC1orf95
HOVERGENQ69YW2
HOGENOMQ69YW2
Homologs : HomoloGeneC1orf95
Homology/Alignments : Family Browser (UCSC)C1orf95
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf95 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf95
dbVarC1orf95
ClinVarC1orf95
1000_GenomesC1orf95 
Exome Variant ServerC1orf95
ExAC (Exome Aggregation Consortium)C1orf95 (select the gene name)
Genetic variants : HAPMAP375057
Genomic Variants (DGV)C1orf95 [DGVbeta]
DECIPHER (Syndromes)1:226736501-226796915  ENSG00000203685
CONAN: Copy Number AnalysisC1orf95 
Mutations
ICGC Data PortalC1orf95 
TCGA Data PortalC1orf95 
Broad Tumor PortalC1orf95
OASIS PortalC1orf95 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf95  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf95
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf95
DgiDB (Drug Gene Interaction Database)C1orf95
DoCM (Curated mutations)C1orf95 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf95 (select a term)
intoGenC1orf95
Cancer3DC1orf95(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf95
Genetic Testing Registry C1orf95
NextProtQ69YW2 [Medical]
TSGene375057
GENETestsC1orf95
Huge Navigator C1orf95 [HugePedia]
snp3D : Map Gene to Disease375057
BioCentury BCIQC1orf95
ClinGenC1orf95
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375057
Chemical/Pharm GKB GenePA142672479
Clinical trialC1orf95
Miscellaneous
canSAR (ICR)C1orf95 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf95
EVEXC1orf95
GoPubMedC1orf95
iHOPC1orf95
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:03 CET 2017

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