Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C20orf112 (chromosome 20 open reading frame 112)

Identity

Other namesC20orf113
dJ1184F4.2
dJ1184F4.4
HGNC (Hugo) C20orf112
LocusID (NCBI) 140688
Location 20q11.21
Location_base_pair Starts at 31030862 and ends at 31172875 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)C20orf112   16106
Entrez_Gene (NCBI)C20orf112  140688  chromosome 20 open reading frame 112
Cards
GeneCards (Weizmann)C20orf112
Ensembl (Hinxton)ENSG00000197183 [Gene_View]  chr20:31030862-31172875 [Contig_View]  C20orf112 [Vega]
AceView (NCBI)C20orf112
Genatlas (Paris)C20orf112
SOURCE (Stanford)NM_001256798 NM_080616
Genomic and cartography
GoldenPath (UCSC)C20orf112  -  20q11.21   chr20:31030862-31172875 -  20q11.21   [Description]    (hg19-Feb_2009)
EnsemblC20orf112 - 20q11.21 [CytoView]
Mapping of homologs : NCBIC20orf112 [Mapview]
Gene and transcription
Genbank (Entrez)AK056286 AK097804 AL122043 AL834520 BC023657
RefSeq transcript (SRS)NM_001256798 NM_080616
RefSeq transcript (Entrez)NM_001256798 NM_080616
RefSeq genomic (SRS)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838664 NW_004078102
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838664 NW_004078102
Consensus coding sequences : CCDS (NCBI)C20orf112
Cluster EST : UnigeneHs.729596 [ SRS ] Hs.729596 [ NCBI ]
CGAP (NCI)Hs.729596
Alternative Splicing : Fast-db (Paris)GSHG0033949
Alternative Splicing GalleryENSG00000197183
Gene ExpressionC20orf112 [ NCBI-GEO ]   C20orf112 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MY1 (SRS) Q96MY1 (Uniprot)
NextProtQ96MY1
With graphics : InterProQ96MY1
Splice isoforms : SwissVarQ96MY1(Swissvar)
Domains : Interpro (SRS)UPF_C20orf112   
Domains : Interpro (EBI)UPF_C20orf112   
Related proteins : CluSTrQ96MY1
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM140688
Blocks (Seattle)Q96MY1
Human Protein AtlasENSG00000197183
HPRD10728
IPIIPI00289086   IPI00607558   IPI00872049   IPI00644822   IPI00645248   IPI00647935   IPI00552263   IPI00645330   
Protein Interaction databases
DIP (DOE-UCLA)Q96MY1
IntAct (EBI)Q96MY1
FunCoupENSG00000197183
REACTOMEC20orf112
Protein Interaction Database140688
BioGRIDC20orf112
InParanoidQ96MY1
Interologous Interaction database Q96MY1
IntegromeDBC20orf112
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)C20orf112
SNP (GeneSNP Utah)C20orf112
SNP : HGBaseC20orf112
Genetic variants : HAPMAPC20orf112
Somatic Mutations in Cancer : COSMICC20orf112 
CONAN: Copy Number AnalysisC20orf112 
Translocation Breakpoints in Cancer : TICdbC20orf112 
Mutations and Diseases : HGMDC20orf112
OMIM
GENETests
Disease Genetic AssociationC20orf112
Huge Navigator C20orf112 [HugePedia]  C20orf112 [HugeCancerGEM]
Genomic VariantsC20orf112  C20orf112 [DGVbeta]
snp3D : Map Gene to Disease140688
General knowledge
Homologs : HomoloGeneC20orf112
Homology/Alignments : Family Browser (UCSC)C20orf112
Phylogenetic Trees/Animal Genes : TreeFamC20orf112
Chemical/Protein Interactions : CTD140688
Chemical/Pharm GKB GenePA25652
Clinical trialC20orf112
Cancer Resource (Charite)ENSG00000197183
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
PubGeneC20orf112
iHOPC20orf112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:44 CEST 2013
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