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C20orf141 (chromosome 20 open reading frame 141)

Identity

Alias_symbol (synonym)dJ860F19.4
Other alias
HGNC (Hugo) C20orf141
LocusID (NCBI) 128653
Atlas_Id 61108
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2814987 and ends at 2815830 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf141   16134
Cards
Entrez_Gene (NCBI)C20orf141  128653  chromosome 20 open reading frame 141
AliasesdJ860F19.4
GeneCards (Weizmann)C20orf141
Ensembl hg19 (Hinxton)ENSG00000258713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258713 [Gene_View]  chr20:2814987-2815830 [Contig_View]  C20orf141 [Vega]
ICGC DataPortalENSG00000258713
TCGA cBioPortalC20orf141
AceView (NCBI)C20orf141
Genatlas (Paris)C20orf141
WikiGenes128653
SOURCE (Princeton)C20orf141
Genetics Home Reference (NIH)C20orf141
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf141  -     chr20:2814987-2815830 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf141  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblC20orf141 - 20p13 [CytoView hg19]  C20orf141 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIC20orf141 [Mapview hg19]  C20orf141 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312218 AL713708 BC014591 BX094374
RefSeq transcript (Entrez)NM_001256538 NM_080739
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf141
Cluster EST : UnigeneHs.352187 [ NCBI ]
CGAP (NCI)Hs.352187
Alternative Splicing GalleryENSG00000258713
Gene ExpressionC20orf141 [ NCBI-GEO ]   C20orf141 [ EBI - ARRAY_EXPRESS ]   C20orf141 [ SEEK ]   C20orf141 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf141 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128653
GTEX Portal (Tissue expression)C20orf141
Human Protein AtlasENSG00000258713-C20orf141 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUB4
Splice isoforms : SwissVarQ9NUB4
PhosPhoSitePlusQ9NUB4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf141
DMDM Disease mutations128653
Blocks (Seattle)C20orf141
SuperfamilyQ9NUB4
Human Protein Atlas [tissue]ENSG00000258713-C20orf141 [tissue]
Peptide AtlasQ9NUB4
HPRD12748
IPIIPI00025699   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUB4
IntAct (EBI)Q9NUB4
FunCoupENSG00000258713
BioGRIDC20orf141
STRING (EMBL)C20orf141
ZODIACC20orf141
Ontologies - Pathways
QuickGOQ9NUB4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC20orf141
Atlas of Cancer Signalling NetworkC20orf141
Wikipedia pathwaysC20orf141
Orthology - Evolution
OrthoDB128653
GeneTree (enSembl)ENSG00000258713
Phylogenetic Trees/Animal Genes : TreeFamC20orf141
HOVERGENQ9NUB4
HOGENOMQ9NUB4
Homologs : HomoloGeneC20orf141
Homology/Alignments : Family Browser (UCSC)C20orf141
Gene fusions - Rearrangements
Tumor Fusion PortalC20orf141
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf141 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf141
dbVarC20orf141
ClinVarC20orf141
1000_GenomesC20orf141 
Exome Variant ServerC20orf141
ExAC (Exome Aggregation Consortium)ENSG00000258713
GNOMAD BrowserENSG00000258713
Genetic variants : HAPMAP128653
Genomic Variants (DGV)C20orf141 [DGVbeta]
DECIPHERC20orf141 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf141 
Mutations
ICGC Data PortalC20orf141 
TCGA Data PortalC20orf141 
Broad Tumor PortalC20orf141
OASIS PortalC20orf141 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf141  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf141
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf141
DgiDB (Drug Gene Interaction Database)C20orf141
DoCM (Curated mutations)C20orf141 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf141 (select a term)
intoGenC20orf141
Cancer3DC20orf141(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC20orf141
MedgenC20orf141
Genetic Testing Registry C20orf141
NextProtQ9NUB4 [Medical]
TSGene128653
GENETestsC20orf141
Target ValidationC20orf141
Huge Navigator C20orf141 [HugePedia]
snp3D : Map Gene to Disease128653
BioCentury BCIQC20orf141
ClinGenC20orf141
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128653
Chemical/Pharm GKB GenePA25684
Clinical trialC20orf141
Miscellaneous
canSAR (ICR)C20orf141 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf141
EVEXC20orf141
GoPubMedC20orf141
iHOPC20orf141
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:14 CET 2017

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