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C20orf144 (chromosome 20 open reading frame 144)

Identity

Alias_symbol (synonym)dJ63M2.6
bclt
Other alias
HGNC (Hugo) C20orf144
LocusID (NCBI) 128864
Atlas_Id 61109
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33662286 and ends at 33663915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf144   16137
Cards
Entrez_Gene (NCBI)C20orf144  128864  chromosome 20 open reading frame 144
AliasesdJ63M2.6
GeneCards (Weizmann)C20orf144
Ensembl hg19 (Hinxton)ENSG00000149609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149609 [Gene_View]  chr20:33662286-33663915 [Contig_View]  C20orf144 [Vega]
ICGC DataPortalENSG00000149609
TCGA cBioPortalC20orf144
AceView (NCBI)C20orf144
Genatlas (Paris)C20orf144
WikiGenes128864
SOURCE (Princeton)C20orf144
Genetics Home Reference (NIH)C20orf144
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf144  -     chr20:33662286-33663915 +  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf144  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblC20orf144 - 20q11.22 [CytoView hg19]  C20orf144 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIC20orf144 [Mapview hg19]  C20orf144 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032818 BX378327 DQ080434
RefSeq transcript (Entrez)NM_080825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf144
Cluster EST : UnigeneHs.324104 [ NCBI ]
CGAP (NCI)Hs.324104
Alternative Splicing GalleryENSG00000149609
Gene ExpressionC20orf144 [ NCBI-GEO ]   C20orf144 [ EBI - ARRAY_EXPRESS ]   C20orf144 [ SEEK ]   C20orf144 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf144 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128864
GTEX Portal (Tissue expression)C20orf144
Human Protein AtlasENSG00000149609-C20orf144 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQM9
Splice isoforms : SwissVarQ9BQM9
PhosPhoSitePlusQ9BQM9
Domains : Interpro (EBI)Bcl-2-like_put   
Domain families : Pfam (Sanger)Bclt (PF15318)   
Domain families : Pfam (NCBI)pfam15318   
Conserved Domain (NCBI)C20orf144
DMDM Disease mutations128864
Blocks (Seattle)C20orf144
SuperfamilyQ9BQM9
Human Protein Atlas [tissue]ENSG00000149609-C20orf144 [tissue]
Peptide AtlasQ9BQM9
HPRD12749
IPIIPI00028594   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQM9
IntAct (EBI)Q9BQM9
FunCoupENSG00000149609
BioGRIDC20orf144
STRING (EMBL)C20orf144
ZODIACC20orf144
Ontologies - Pathways
QuickGOQ9BQM9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf144
Atlas of Cancer Signalling NetworkC20orf144
Wikipedia pathwaysC20orf144
Orthology - Evolution
OrthoDB128864
GeneTree (enSembl)ENSG00000149609
Phylogenetic Trees/Animal Genes : TreeFamC20orf144
HOVERGENQ9BQM9
HOGENOMQ9BQM9
Homologs : HomoloGeneC20orf144
Homology/Alignments : Family Browser (UCSC)C20orf144
Gene fusions - Rearrangements
Tumor Fusion PortalC20orf144
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf144 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf144
dbVarC20orf144
ClinVarC20orf144
1000_GenomesC20orf144 
Exome Variant ServerC20orf144
ExAC (Exome Aggregation Consortium)ENSG00000149609
GNOMAD BrowserENSG00000149609
Genetic variants : HAPMAP128864
Genomic Variants (DGV)C20orf144 [DGVbeta]
DECIPHERC20orf144 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf144 
Mutations
ICGC Data PortalC20orf144 
TCGA Data PortalC20orf144 
Broad Tumor PortalC20orf144
OASIS PortalC20orf144 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf144  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf144
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf144
DgiDB (Drug Gene Interaction Database)C20orf144
DoCM (Curated mutations)C20orf144 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf144 (select a term)
intoGenC20orf144
Cancer3DC20orf144(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC20orf144
MedgenC20orf144
Genetic Testing Registry C20orf144
NextProtQ9BQM9 [Medical]
TSGene128864
GENETestsC20orf144
Target ValidationC20orf144
Huge Navigator C20orf144 [HugePedia]
snp3D : Map Gene to Disease128864
BioCentury BCIQC20orf144
ClinGenC20orf144
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128864
Chemical/Pharm GKB GenePA25687
Clinical trialC20orf144
Miscellaneous
canSAR (ICR)C20orf144 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf144
EVEXC20orf144
GoPubMedC20orf144
iHOPC20orf144
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:14 CET 2017

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