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C20orf166-AS1 (C20orf166 antisense RNA 1)

Identity

Alias_namesC20orf200
NCRNA00335
chromosome 20 open reading frame 200
non-protein coding RNA 335
C20orf166 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FLJ30313
Other alias
HGNC (Hugo) C20orf166-AS1
LocusID (NCBI) 253868
Atlas_Id 61110
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62544547 and ends at 62551524 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf166-AS1   26393
Cards
Entrez_Gene (NCBI)C20orf166-AS1  253868  C20orf166 antisense RNA 1
AliasesC20orf200; NCRNA00335
GeneCards (Weizmann)C20orf166-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:62544547-62551524 [Contig_View]  C20orf166-AS1 [Vega]
TCGA cBioPortalC20orf166-AS1
AceView (NCBI)C20orf166-AS1
Genatlas (Paris)C20orf166-AS1
WikiGenes253868
SOURCE (Princeton)C20orf166-AS1
Genetics Home Reference (NIH)C20orf166-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf166-AS1  -     chr20:62544547-62551524 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf166-AS1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblC20orf166-AS1 - 20q13.33 [CytoView hg19]  C20orf166-AS1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIC20orf166-AS1 [Mapview hg19]  C20orf166-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054875 AK056546 AL832097 BC093856 BC111938
RefSeq transcript (Entrez)NM_152757
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf166-AS1
Cluster EST : UnigeneHs.337024 [ NCBI ]
CGAP (NCI)Hs.337024
Gene ExpressionC20orf166-AS1 [ NCBI-GEO ]   C20orf166-AS1 [ EBI - ARRAY_EXPRESS ]   C20orf166-AS1 [ SEEK ]   C20orf166-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf166-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253868
GTEX Portal (Tissue expression)C20orf166-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NR2
Splice isoforms : SwissVarQ96NR2
PhosPhoSitePlusQ96NR2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf166-AS1
DMDM Disease mutations253868
Blocks (Seattle)C20orf166-AS1
SuperfamilyQ96NR2
Peptide AtlasQ96NR2
HPRD08083
IPIIPI00604525   IPI01025669   
Protein Interaction databases
DIP (DOE-UCLA)Q96NR2
IntAct (EBI)Q96NR2
BioGRIDC20orf166-AS1
STRING (EMBL)C20orf166-AS1
ZODIACC20orf166-AS1
Ontologies - Pathways
QuickGOQ96NR2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf166-AS1
Atlas of Cancer Signalling NetworkC20orf166-AS1
Wikipedia pathwaysC20orf166-AS1
Orthology - Evolution
OrthoDB253868
Phylogenetic Trees/Animal Genes : TreeFamC20orf166-AS1
HOVERGENQ96NR2
HOGENOMQ96NR2
Homologs : HomoloGeneC20orf166-AS1
Homology/Alignments : Family Browser (UCSC)C20orf166-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf166-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf166-AS1
dbVarC20orf166-AS1
ClinVarC20orf166-AS1
1000_GenomesC20orf166-AS1 
Exome Variant ServerC20orf166-AS1
ExAC (Exome Aggregation Consortium)C20orf166-AS1 (select the gene name)
Genetic variants : HAPMAP253868
Genomic Variants (DGV)C20orf166-AS1 [DGVbeta]
DECIPHERC20orf166-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf166-AS1 
Mutations
ICGC Data PortalC20orf166-AS1 
TCGA Data PortalC20orf166-AS1 
Broad Tumor PortalC20orf166-AS1
OASIS PortalC20orf166-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC20orf166-AS1
BioMutasearch C20orf166-AS1
DgiDB (Drug Gene Interaction Database)C20orf166-AS1
DoCM (Curated mutations)C20orf166-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf166-AS1 (select a term)
intoGenC20orf166-AS1
Cancer3DC20orf166-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf166-AS1
Genetic Testing Registry C20orf166-AS1
NextProtQ96NR2 [Medical]
TSGene253868
GENETestsC20orf166-AS1
Target ValidationC20orf166-AS1
Huge Navigator C20orf166-AS1 [HugePedia]
snp3D : Map Gene to Disease253868
BioCentury BCIQC20orf166-AS1
ClinGenC20orf166-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253868
Chemical/Pharm GKB GenePA162378945
Clinical trialC20orf166-AS1
Miscellaneous
canSAR (ICR)C20orf166-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf166-AS1
EVEXC20orf166-AS1
GoPubMedC20orf166-AS1
iHOPC20orf166-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:09 CEST 2017

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