Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C20orf173 (chromosome 20 open reading frame 173)

Identity

Alias_symbol (synonym)dJ477O4.4
Other alias
HGNC (Hugo) C20orf173
LocusID (NCBI) 140873
Atlas_Id 61111
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 35526971 and ends at 35529652 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf173   16166
Cards
Entrez_Gene (NCBI)C20orf173  140873  chromosome 20 open reading frame 173
AliasesdJ477O4.4
GeneCards (Weizmann)C20orf173
Ensembl hg19 (Hinxton)ENSG00000125975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125975 [Gene_View]  chr20:35526971-35529652 [Contig_View]  C20orf173 [Vega]
ICGC DataPortalENSG00000125975
TCGA cBioPortalC20orf173
AceView (NCBI)C20orf173
Genatlas (Paris)C20orf173
WikiGenes140873
SOURCE (Princeton)C20orf173
Genetics Home Reference (NIH)C20orf173
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf173  -     chr20:35526971-35529652 -  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf173  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblC20orf173 - 20q11.22 [CytoView hg19]  C20orf173 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIC20orf173 [Mapview hg19]  C20orf173 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058089 AK310337 BC112060 BC112062 DB057743
RefSeq transcript (Entrez)NM_001145350 NM_080828
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf173
Cluster EST : UnigeneHs.158680 [ NCBI ]
CGAP (NCI)Hs.158680
Alternative Splicing GalleryENSG00000125975
Gene ExpressionC20orf173 [ NCBI-GEO ]   C20orf173 [ EBI - ARRAY_EXPRESS ]   C20orf173 [ SEEK ]   C20orf173 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf173 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140873
GTEX Portal (Tissue expression)C20orf173
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LM9
Splice isoforms : SwissVarQ96LM9
PhosPhoSitePlusQ96LM9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf173
DMDM Disease mutations140873
Blocks (Seattle)C20orf173
SuperfamilyQ96LM9
Human Protein AtlasENSG00000125975
Peptide AtlasQ96LM9
HPRD12756
IPIIPI00097230   IPI00607822   IPI00657893   
Protein Interaction databases
DIP (DOE-UCLA)Q96LM9
IntAct (EBI)Q96LM9
FunCoupENSG00000125975
BioGRIDC20orf173
STRING (EMBL)C20orf173
ZODIACC20orf173
Ontologies - Pathways
QuickGOQ96LM9
Ontology : AmiGOoligosaccharide metabolic process  protein N-linked glycosylation via asparagine  monosialoganglioside sialyltransferase activity  sialylation  
Ontology : EGO-EBIoligosaccharide metabolic process  protein N-linked glycosylation via asparagine  monosialoganglioside sialyltransferase activity  sialylation  
NDEx NetworkC20orf173
Atlas of Cancer Signalling NetworkC20orf173
Wikipedia pathwaysC20orf173
Orthology - Evolution
OrthoDB140873
GeneTree (enSembl)ENSG00000125975
Phylogenetic Trees/Animal Genes : TreeFamC20orf173
HOVERGENQ96LM9
HOGENOMQ96LM9
Homologs : HomoloGeneC20orf173
Homology/Alignments : Family Browser (UCSC)C20orf173
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf173 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf173
dbVarC20orf173
ClinVarC20orf173
1000_GenomesC20orf173 
Exome Variant ServerC20orf173
ExAC (Exome Aggregation Consortium)C20orf173 (select the gene name)
Genetic variants : HAPMAP140873
Genomic Variants (DGV)C20orf173 [DGVbeta]
DECIPHERC20orf173 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf173 
Mutations
ICGC Data PortalC20orf173 
TCGA Data PortalC20orf173 
Broad Tumor PortalC20orf173
OASIS PortalC20orf173 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf173  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf173
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf173
DgiDB (Drug Gene Interaction Database)C20orf173
DoCM (Curated mutations)C20orf173 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf173 (select a term)
intoGenC20orf173
Cancer3DC20orf173(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf173
Genetic Testing Registry C20orf173
NextProtQ96LM9 [Medical]
TSGene140873
GENETestsC20orf173
Target ValidationC20orf173
Huge Navigator C20orf173 [HugePedia]
snp3D : Map Gene to Disease140873
BioCentury BCIQC20orf173
ClinGenC20orf173
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140873
Chemical/Pharm GKB GenePA25716
Clinical trialC20orf173
Miscellaneous
canSAR (ICR)C20orf173 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf173
EVEXC20orf173
GoPubMedC20orf173
iHOPC20orf173
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:10 CEST 2017

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