Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C20orf187 (chromosome 20 open reading frame 187)

Identity

Alias_symbol (synonym)dJ727I10.1
Other alias-
HGNC (Hugo) C20orf187
LocusID (NCBI) 728434
Atlas_Id 78952
Location 20p12.2  [Link to chromosome band 20p12]
Location_base_pair Starts at 11026544 and ends at 11029366 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C20orf187   16180
Cards
Entrez_Gene (NCBI)C20orf187  728434  chromosome 20 open reading frame 187
Aliases
GeneCards (Weizmann)C20orf187
Ensembl hg19 (Hinxton)ENSG00000125899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125899 [Gene_View]  chr20:11026544-11029366 [Contig_View]  C20orf187 [Vega]
ICGC DataPortalENSG00000125899
TCGA cBioPortalC20orf187
AceView (NCBI)C20orf187
Genatlas (Paris)C20orf187
WikiGenes728434
SOURCE (Princeton)C20orf187
Genetics Home Reference (NIH)C20orf187
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf187  -     chr20:11026544-11029366 +  20p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf187  -     20p12.2   [Description]    (hg19-Feb_2009)
EnsemblC20orf187 - 20p12.2 [CytoView hg19]  C20orf187 - 20p12.2 [CytoView hg38]
Mapping of homologs : NCBIC20orf187 [Mapview hg19]  C20orf187 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX281604
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf187
Cluster EST : UnigeneHs.570365 [ NCBI ]
CGAP (NCI)Hs.570365
Alternative Splicing GalleryENSG00000125899
Gene ExpressionC20orf187 [ NCBI-GEO ]   C20orf187 [ EBI - ARRAY_EXPRESS ]   C20orf187 [ SEEK ]   C20orf187 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf187 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728434
GTEX Portal (Tissue expression)C20orf187
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGB4
Splice isoforms : SwissVarQ9UGB4
PhosPhoSitePlusQ9UGB4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf187
DMDM Disease mutations728434
Blocks (Seattle)C20orf187
SuperfamilyQ9UGB4
Human Protein AtlasENSG00000125899
Peptide AtlasQ9UGB4
IPIIPI00005235   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGB4
IntAct (EBI)Q9UGB4
FunCoupENSG00000125899
BioGRIDC20orf187
STRING (EMBL)C20orf187
ZODIACC20orf187
Ontologies - Pathways
QuickGOQ9UGB4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf187
Atlas of Cancer Signalling NetworkC20orf187
Wikipedia pathwaysC20orf187
Orthology - Evolution
OrthoDB728434
GeneTree (enSembl)ENSG00000125899
Phylogenetic Trees/Animal Genes : TreeFamC20orf187
HOVERGENQ9UGB4
HOGENOMQ9UGB4
Homologs : HomoloGeneC20orf187
Homology/Alignments : Family Browser (UCSC)C20orf187
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf187 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf187
dbVarC20orf187
ClinVarC20orf187
1000_GenomesC20orf187 
Exome Variant ServerC20orf187
ExAC (Exome Aggregation Consortium)C20orf187 (select the gene name)
Genetic variants : HAPMAP728434
Genomic Variants (DGV)C20orf187 [DGVbeta]
DECIPHERC20orf187 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf187 
Mutations
ICGC Data PortalC20orf187 
TCGA Data PortalC20orf187 
Broad Tumor PortalC20orf187
OASIS PortalC20orf187 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf187  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf187
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf187
DgiDB (Drug Gene Interaction Database)C20orf187
DoCM (Curated mutations)C20orf187 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf187 (select a term)
intoGenC20orf187
Cancer3DC20orf187(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf187
Genetic Testing Registry C20orf187
NextProtQ9UGB4 [Medical]
TSGene728434
GENETestsC20orf187
Target ValidationC20orf187
Huge Navigator C20orf187 [HugePedia]
snp3D : Map Gene to Disease728434
BioCentury BCIQC20orf187
ClinGenC20orf187
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728434
Chemical/Pharm GKB GenePA25729
Clinical trialC20orf187
Miscellaneous
canSAR (ICR)C20orf187 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf187
EVEXC20orf187
GoPubMedC20orf187
iHOPC20orf187
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:10 CEST 2017

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