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C20orf194 (chromosome 20 open reading frame 194)

Identity

Alias_symbol (synonym)DKFZp434N061
Other alias-
HGNC (Hugo) C20orf194
LocusID (NCBI) 25943
Atlas_Id 61113
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3249302 and ends at 3407662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C20orf194 (20p13) / CEACAM16 (19q13.32)C20orf194 (20p13) / EVI5 (1p22.1)C20orf194 (20p13) / TDRD10 (1q21.3)
UBE2F (2q37.3) / C20orf194 (20p13)C20orf194 TDRD10C20orf194 EVI5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf194   17721
Cards
Entrez_Gene (NCBI)C20orf194  25943  chromosome 20 open reading frame 194
Aliases
GeneCards (Weizmann)C20orf194
Ensembl hg19 (Hinxton)ENSG00000088854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088854 [Gene_View]  chr20:3249302-3407662 [Contig_View]  C20orf194 [Vega]
ICGC DataPortalENSG00000088854
TCGA cBioPortalC20orf194
AceView (NCBI)C20orf194
Genatlas (Paris)C20orf194
WikiGenes25943
SOURCE (Princeton)C20orf194
Genetics Home Reference (NIH)C20orf194
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf194  -     chr20:3249302-3407662 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf194  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblC20orf194 - 20p13 [CytoView hg19]  C20orf194 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIC20orf194 [Mapview hg19]  C20orf194 [Mapview hg38]
OMIM614146   
Gene and transcription
Genbank (Entrez)AI214589 AK023919 AK226100 AK303375 AK310540
RefSeq transcript (Entrez)NM_001009984
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf194
Cluster EST : UnigeneHs.516853 [ NCBI ]
CGAP (NCI)Hs.516853
Alternative Splicing GalleryENSG00000088854
Gene ExpressionC20orf194 [ NCBI-GEO ]   C20orf194 [ EBI - ARRAY_EXPRESS ]   C20orf194 [ SEEK ]   C20orf194 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf194 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25943
GTEX Portal (Tissue expression)C20orf194
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TEA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TEA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TEA3
Splice isoforms : SwissVarQ5TEA3
PhosPhoSitePlusQ5TEA3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf194
DMDM Disease mutations25943
Blocks (Seattle)C20orf194
SuperfamilyQ5TEA3
Human Protein AtlasENSG00000088854
Peptide AtlasQ5TEA3
IPIIPI00333634   IPI00910855   
Protein Interaction databases
DIP (DOE-UCLA)Q5TEA3
IntAct (EBI)Q5TEA3
FunCoupENSG00000088854
BioGRIDC20orf194
STRING (EMBL)C20orf194
ZODIACC20orf194
Ontologies - Pathways
QuickGOQ5TEA3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf194
Atlas of Cancer Signalling NetworkC20orf194
Wikipedia pathwaysC20orf194
Orthology - Evolution
OrthoDB25943
GeneTree (enSembl)ENSG00000088854
Phylogenetic Trees/Animal Genes : TreeFamC20orf194
HOVERGENQ5TEA3
HOGENOMQ5TEA3
Homologs : HomoloGeneC20orf194
Homology/Alignments : Family Browser (UCSC)C20orf194
Gene fusions - Rearrangements
Fusion: TCGAC20orf194 TDRD10
Fusion: TCGAC20orf194 EVI5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf194 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf194
dbVarC20orf194
ClinVarC20orf194
1000_GenomesC20orf194 
Exome Variant ServerC20orf194
ExAC (Exome Aggregation Consortium)C20orf194 (select the gene name)
Genetic variants : HAPMAP25943
Genomic Variants (DGV)C20orf194 [DGVbeta]
DECIPHERC20orf194 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf194 
Mutations
ICGC Data PortalC20orf194 
TCGA Data PortalC20orf194 
Broad Tumor PortalC20orf194
OASIS PortalC20orf194 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf194  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf194
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf194
DgiDB (Drug Gene Interaction Database)C20orf194
DoCM (Curated mutations)C20orf194 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf194 (select a term)
intoGenC20orf194
Cancer3DC20orf194(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614146   
Orphanet
MedgenC20orf194
Genetic Testing Registry C20orf194
NextProtQ5TEA3 [Medical]
TSGene25943
GENETestsC20orf194
Target ValidationC20orf194
Huge Navigator C20orf194 [HugePedia]
snp3D : Map Gene to Disease25943
BioCentury BCIQC20orf194
ClinGenC20orf194
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25943
Chemical/Pharm GKB GenePA134905007
Clinical trialC20orf194
Miscellaneous
canSAR (ICR)C20orf194 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf194
EVEXC20orf194
GoPubMedC20orf194
iHOPC20orf194
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:00 CEST 2017

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