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C20orf195 (chromosome 20 open reading frame 195)

Identity

Other alias-
HGNC (Hugo) C20orf195
LocusID (NCBI) 79025
Atlas_Id 61114
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62184373 and ends at 62188035 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COL1A1 (17q21.33) / C20orf195 (20q13.33)RP4-697K14.7 () / C20orf195 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf195   28764
Cards
Entrez_Gene (NCBI)C20orf195  79025  chromosome 20 open reading frame 195
Aliases
GeneCards (Weizmann)C20orf195
Ensembl hg19 (Hinxton)ENSG00000125531 [Gene_View]  chr20:62184373-62188035 [Contig_View]  C20orf195 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125531 [Gene_View]  chr20:62184373-62188035 [Contig_View]  C20orf195 [Vega]
ICGC DataPortalENSG00000125531
TCGA cBioPortalC20orf195
AceView (NCBI)C20orf195
Genatlas (Paris)C20orf195
WikiGenes79025
SOURCE (Princeton)C20orf195
Genetics Home Reference (NIH)C20orf195
Genomic and cartography
GoldenPath hg19 (UCSC)C20orf195  -     chr20:62184373-62188035 +  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C20orf195  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblC20orf195 - 20q13.33 [CytoView hg19]  C20orf195 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIC20orf195 [Mapview hg19]  C20orf195 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125168 BC000912
RefSeq transcript (Entrez)NM_024059
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929419
Consensus coding sequences : CCDS (NCBI)C20orf195
Cluster EST : UnigeneHs.197755 [ NCBI ]
CGAP (NCI)Hs.197755
Alternative Splicing GalleryENSG00000125531
Gene ExpressionC20orf195 [ NCBI-GEO ]   C20orf195 [ EBI - ARRAY_EXPRESS ]   C20orf195 [ SEEK ]   C20orf195 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf195 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79025
GTEX Portal (Tissue expression)C20orf195
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVV2
Splice isoforms : SwissVarQ9BVV2
PhosPhoSitePlusQ9BVV2
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf195
DMDM Disease mutations79025
Blocks (Seattle)C20orf195
SuperfamilyQ9BVV2
Human Protein AtlasENSG00000125531
Peptide AtlasQ9BVV2
HPRD14682
IPIIPI00031603   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVV2
IntAct (EBI)Q9BVV2
FunCoupENSG00000125531
BioGRIDC20orf195
STRING (EMBL)C20orf195
ZODIACC20orf195
Ontologies - Pathways
QuickGOQ9BVV2
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkC20orf195
Atlas of Cancer Signalling NetworkC20orf195
Wikipedia pathwaysC20orf195
Orthology - Evolution
OrthoDB79025
GeneTree (enSembl)ENSG00000125531
Phylogenetic Trees/Animal Genes : TreeFamC20orf195
HOVERGENQ9BVV2
HOGENOMQ9BVV2
Homologs : HomoloGeneC20orf195
Homology/Alignments : Family Browser (UCSC)C20orf195
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf195 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf195
dbVarC20orf195
ClinVarC20orf195
1000_GenomesC20orf195 
Exome Variant ServerC20orf195
ExAC (Exome Aggregation Consortium)C20orf195 (select the gene name)
Genetic variants : HAPMAP79025
Genomic Variants (DGV)C20orf195 [DGVbeta]
DECIPHER (Syndromes)20:62184373-62188035  ENSG00000125531
CONAN: Copy Number AnalysisC20orf195 
Mutations
ICGC Data PortalC20orf195 
TCGA Data PortalC20orf195 
Broad Tumor PortalC20orf195
OASIS PortalC20orf195 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf195  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf195
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf195
DgiDB (Drug Gene Interaction Database)C20orf195
DoCM (Curated mutations)C20orf195 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf195 (select a term)
intoGenC20orf195
Cancer3DC20orf195(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf195
Genetic Testing Registry C20orf195
NextProtQ9BVV2 [Medical]
TSGene79025
GENETestsC20orf195
Huge Navigator C20orf195 [HugePedia]
snp3D : Map Gene to Disease79025
BioCentury BCIQC20orf195
ClinGenC20orf195
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79025
Chemical/Pharm GKB GenePA142672215
Clinical trialC20orf195
Miscellaneous
canSAR (ICR)C20orf195 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf195
EVEXC20orf195
GoPubMedC20orf195
iHOPC20orf195
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:07 CET 2017

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