Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C20orf196 (chromosome 20 open reading frame 196)

Identity

Alias_symbol (synonym)FLJ25067
Other alias-
HGNC (Hugo) C20orf196
LocusID (NCBI) 149840
Atlas_Id 61115
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 5750387 and ends at 5864407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		C20orf196 (20p12.3) / ANXA2 (15q22.2)C20orf196 (20p12.3) / NCKAP1 (2q32.1)SLC1A3 (5p13.2) / C20orf196 (20p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C20orf196   26318
Cards
Entrez_Gene (NCBI)C20orf196  149840  chromosome 20 open reading frame 196
Aliases
GeneCards (Weizmann)C20orf196
Ensembl hg19 (Hinxton)ENSG00000171984 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171984 [Gene_View]  chr20:5750387-5864407 [Contig_View]  C20orf196 [Vega]
ICGC DataPortalENSG00000171984
TCGA cBioPortalC20orf196
AceView (NCBI)C20orf196
Genatlas (Paris)C20orf196
WikiGenes149840
SOURCE (Princeton)C20orf196
Genetics Home Reference (NIH)C20orf196
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf196  -     chr20:5750387-5864407 +  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf196  -     20p12.3   [Description]    (hg19-Feb_2009)
EnsemblC20orf196 - 20p12.3 [CytoView hg19]  C20orf196 - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBIC20orf196 [Mapview hg19]  C20orf196 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057796 AK292708 AK310715 AV715251 BC035800
RefSeq transcript (Entrez)NM_001303477 NM_001303478 NM_001303479 NM_152504
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf196
Cluster EST : UnigeneHs.529340 [ NCBI ]
CGAP (NCI)Hs.529340
Alternative Splicing GalleryENSG00000171984
Gene ExpressionC20orf196 [ NCBI-GEO ]   C20orf196 [ EBI - ARRAY_EXPRESS ]   C20orf196 [ SEEK ]   C20orf196 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf196 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149840
GTEX Portal (Tissue expression)C20orf196
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYI0
Splice isoforms : SwissVarQ8IYI0
PhosPhoSitePlusQ8IYI0
Domains : Interpro (EBI)DUF4521   
Domain families : Pfam (Sanger)DUF4521 (PF15021)   
Domain families : Pfam (NCBI)pfam15021   
Conserved Domain (NCBI)C20orf196
DMDM Disease mutations149840
Blocks (Seattle)C20orf196
SuperfamilyQ8IYI0
Human Protein AtlasENSG00000171984
Peptide AtlasQ8IYI0
HPRD08681
IPIIPI00844108   IPI00387057   IPI01010237   IPI00642519   IPI00645105   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYI0
IntAct (EBI)Q8IYI0
FunCoupENSG00000171984
BioGRIDC20orf196
STRING (EMBL)C20orf196
ZODIACC20orf196
Ontologies - Pathways
QuickGOQ8IYI0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf196
Atlas of Cancer Signalling NetworkC20orf196
Wikipedia pathwaysC20orf196
Orthology - Evolution
OrthoDB149840
GeneTree (enSembl)ENSG00000171984
Phylogenetic Trees/Animal Genes : TreeFamC20orf196
HOVERGENQ8IYI0
HOGENOMQ8IYI0
Homologs : HomoloGeneC20orf196
Homology/Alignments : Family Browser (UCSC)C20orf196
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf196 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf196
dbVarC20orf196
ClinVarC20orf196
1000_GenomesC20orf196 
Exome Variant ServerC20orf196
ExAC (Exome Aggregation Consortium)C20orf196 (select the gene name)
Genetic variants : HAPMAP149840
Genomic Variants (DGV)C20orf196 [DGVbeta]
DECIPHERC20orf196 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf196 
Mutations
ICGC Data PortalC20orf196 
TCGA Data PortalC20orf196 
Broad Tumor PortalC20orf196
OASIS PortalC20orf196 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf196  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf196
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf196
DgiDB (Drug Gene Interaction Database)C20orf196
DoCM (Curated mutations)C20orf196 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf196 (select a term)
intoGenC20orf196
Cancer3DC20orf196(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf196
Genetic Testing Registry C20orf196
NextProtQ8IYI0 [Medical]
TSGene149840
GENETestsC20orf196
Target ValidationC20orf196
Huge Navigator C20orf196 [HugePedia]
snp3D : Map Gene to Disease149840
BioCentury BCIQC20orf196
ClinGenC20orf196
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149840
Chemical/Pharm GKB GenePA145149476
Clinical trialC20orf196
Miscellaneous
canSAR (ICR)C20orf196 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf196
EVEXC20orf196
GoPubMedC20orf196
iHOPC20orf196
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:01 CEST 2017
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