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C20orf197 (chromosome 20 open reading frame 197)

Identity

Alias_symbol (synonym)FLJ33860
Other alias-
HGNC (Hugo) C20orf197
LocusID (NCBI) 284756
Atlas_Id 61116
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 58630980 and ends at 58648008 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf197   26601
Cards
Entrez_Gene (NCBI)C20orf197  284756  chromosome 20 open reading frame 197
Aliases
GeneCards (Weizmann)C20orf197
Ensembl hg19 (Hinxton) [Gene_View]  chr20:58630980-58648008 [Contig_View]  C20orf197 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:58630980-58648008 [Contig_View]  C20orf197 [Vega]
TCGA cBioPortalC20orf197
AceView (NCBI)C20orf197
Genatlas (Paris)C20orf197
WikiGenes284756
SOURCE (Princeton)C20orf197
Genetics Home Reference (NIH)C20orf197
Genomic and cartography
GoldenPath hg19 (UCSC)C20orf197  -     chr20:58630980-58648008 +  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C20orf197  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblC20orf197 - 20q13.33 [CytoView hg19]  C20orf197 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIC20orf197 [Mapview hg19]  C20orf197 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA312243 AK091179 AY358539 BC101349 BC101350
RefSeq transcript (Entrez)NM_001302813 NM_001302815 NM_173644
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)C20orf197
Cluster EST : UnigeneHs.335319 [ NCBI ]
CGAP (NCI)Hs.335319
Gene ExpressionC20orf197 [ NCBI-GEO ]   C20orf197 [ EBI - ARRAY_EXPRESS ]   C20orf197 [ SEEK ]   C20orf197 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf197 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284756
GTEX Portal (Tissue expression)C20orf197
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N268   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N268  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N268
Splice isoforms : SwissVarQ8N268
PhosPhoSitePlusQ8N268
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf197
DMDM Disease mutations284756
Blocks (Seattle)C20orf197
SuperfamilyQ8N268
Peptide AtlasQ8N268
HPRD08749
IPIIPI00166307   IPI00827936   IPI00432373   
Protein Interaction databases
DIP (DOE-UCLA)Q8N268
IntAct (EBI)Q8N268
BioGRIDC20orf197
STRING (EMBL)C20orf197
ZODIACC20orf197
Ontologies - Pathways
QuickGOQ8N268
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf197
Atlas of Cancer Signalling NetworkC20orf197
Wikipedia pathwaysC20orf197
Orthology - Evolution
OrthoDB284756
Phylogenetic Trees/Animal Genes : TreeFamC20orf197
HOVERGENQ8N268
HOGENOMQ8N268
Homologs : HomoloGeneC20orf197
Homology/Alignments : Family Browser (UCSC)C20orf197
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf197 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf197
dbVarC20orf197
ClinVarC20orf197
1000_GenomesC20orf197 
Exome Variant ServerC20orf197
ExAC (Exome Aggregation Consortium)C20orf197 (select the gene name)
Genetic variants : HAPMAP284756
Genomic Variants (DGV)C20orf197 [DGVbeta]
DECIPHER (Syndromes)20:58630980-58648008  
CONAN: Copy Number AnalysisC20orf197 
Mutations
ICGC Data PortalC20orf197 
TCGA Data PortalC20orf197 
Broad Tumor PortalC20orf197
OASIS PortalC20orf197 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf197  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf197
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf197
DgiDB (Drug Gene Interaction Database)C20orf197
DoCM (Curated mutations)C20orf197 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf197 (select a term)
intoGenC20orf197
Cancer3DC20orf197(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf197
Genetic Testing Registry C20orf197
NextProtQ8N268 [Medical]
TSGene284756
GENETestsC20orf197
Huge Navigator C20orf197 [HugePedia]
snp3D : Map Gene to Disease284756
BioCentury BCIQC20orf197
ClinGenC20orf197
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284756
Chemical/Pharm GKB GenePA145149486
Clinical trialC20orf197
Miscellaneous
canSAR (ICR)C20orf197 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf197
EVEXC20orf197
GoPubMedC20orf197
iHOPC20orf197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:07 CET 2017

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