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C20orf202 (chromosome 20 open reading frame 202)

Identity

Other alias-
HGNC (Hugo) C20orf202
LocusID (NCBI) 400831
Atlas_Id 61117
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1203454 and ends at 1208274 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf202   37254
Cards
Entrez_Gene (NCBI)C20orf202  400831  chromosome 20 open reading frame 202
Aliases
GeneCards (Weizmann)C20orf202
Ensembl hg19 (Hinxton)ENSG00000215595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215595 [Gene_View]  chr20:1203454-1208274 [Contig_View]  C20orf202 [Vega]
ICGC DataPortalENSG00000215595
TCGA cBioPortalC20orf202
AceView (NCBI)C20orf202
Genatlas (Paris)C20orf202
WikiGenes400831
SOURCE (Princeton)C20orf202
Genetics Home Reference (NIH)C20orf202
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf202  -     chr20:1203454-1208274 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf202  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblC20orf202 - 20p13 [CytoView hg19]  C20orf202 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIC20orf202 [Mapview hg19]  C20orf202 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092524 BC127730 BC127731 BC141955 BC141956
RefSeq transcript (Entrez)NM_001009612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf202
Cluster EST : UnigeneHs.148503 [ NCBI ]
CGAP (NCI)Hs.148503
Alternative Splicing GalleryENSG00000215595
Gene ExpressionC20orf202 [ NCBI-GEO ]   C20orf202 [ EBI - ARRAY_EXPRESS ]   C20orf202 [ SEEK ]   C20orf202 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf202 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400831
GTEX Portal (Tissue expression)C20orf202
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L168   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L168  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L168
Splice isoforms : SwissVarA1L168
PhosPhoSitePlusA1L168
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf202
DMDM Disease mutations400831
Blocks (Seattle)C20orf202
SuperfamilyA1L168
Human Protein AtlasENSG00000215595
Peptide AtlasA1L168
HPRD17387
IPIIPI00783496   
Protein Interaction databases
DIP (DOE-UCLA)A1L168
IntAct (EBI)A1L168
FunCoupENSG00000215595
BioGRIDC20orf202
STRING (EMBL)C20orf202
ZODIACC20orf202
Ontologies - Pathways
QuickGOA1L168
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf202
Atlas of Cancer Signalling NetworkC20orf202
Wikipedia pathwaysC20orf202
Orthology - Evolution
OrthoDB400831
GeneTree (enSembl)ENSG00000215595
Phylogenetic Trees/Animal Genes : TreeFamC20orf202
HOVERGENA1L168
HOGENOMA1L168
Homologs : HomoloGeneC20orf202
Homology/Alignments : Family Browser (UCSC)C20orf202
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf202 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf202
dbVarC20orf202
ClinVarC20orf202
1000_GenomesC20orf202 
Exome Variant ServerC20orf202
ExAC (Exome Aggregation Consortium)C20orf202 (select the gene name)
Genetic variants : HAPMAP400831
Genomic Variants (DGV)C20orf202 [DGVbeta]
DECIPHERC20orf202 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf202 
Mutations
ICGC Data PortalC20orf202 
TCGA Data PortalC20orf202 
Broad Tumor PortalC20orf202
OASIS PortalC20orf202 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf202  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf202
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf202
DgiDB (Drug Gene Interaction Database)C20orf202
DoCM (Curated mutations)C20orf202 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf202 (select a term)
intoGenC20orf202
Cancer3DC20orf202(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf202
Genetic Testing Registry C20orf202
NextProtA1L168 [Medical]
TSGene400831
GENETestsC20orf202
Target ValidationC20orf202
Huge Navigator C20orf202 [HugePedia]
snp3D : Map Gene to Disease400831
BioCentury BCIQC20orf202
ClinGenC20orf202
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400831
Chemical/Pharm GKB GenePA165392338
Clinical trialC20orf202
Miscellaneous
canSAR (ICR)C20orf202 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf202
EVEXC20orf202
GoPubMedC20orf202
iHOPC20orf202
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:11 CEST 2017

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