Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C20orf204 (chromosome 20 open reading frame 204)

Identity

Other aliasLINC00176
NCRNA00176
PRR17
HGNC (Hugo) C20orf204
LocusID (NCBI) 284739
Atlas_Id 57761
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64033727 and ends at 64039001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf204   27655
Cards
Entrez_Gene (NCBI)C20orf204  284739  chromosome 20 open reading frame 204
AliasesLINC00176; NCRNA00176; PRR17
GeneCards (Weizmann)C20orf204
Ensembl hg19 (Hinxton)ENSG00000196421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196421 [Gene_View]  ENSG00000196421 [Sequence]  chr20:64033727-64039001 [Contig_View]  C20orf204 [Vega]
ICGC DataPortalENSG00000196421
TCGA cBioPortalC20orf204
AceView (NCBI)C20orf204
Genatlas (Paris)C20orf204
WikiGenes284739
SOURCE (Princeton)C20orf204
Genetics Home Reference (NIH)C20orf204
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf204  -     chr20:64033727-64039001 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf204  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblC20orf204 - 20q13.33 [CytoView hg19]  C20orf204 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIC20orf204 [Mapview hg19]  C20orf204 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130777 AK310631 AL157500 BC033342 DA111479
RefSeq transcript (Entrez)NM_001348090 NM_207349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf204
Cluster EST : UnigeneHs.97840 [ NCBI ]
CGAP (NCI)Hs.97840
Alternative Splicing GalleryENSG00000196421
Gene ExpressionC20orf204 [ NCBI-GEO ]   C20orf204 [ EBI - ARRAY_EXPRESS ]   C20orf204 [ SEEK ]   C20orf204 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf204 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)284739
GTEX Portal (Tissue expression)C20orf204
Human Protein AtlasENSG00000196421-C20orf204 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf204
DMDM Disease mutations284739
Blocks (Seattle)C20orf204
Human Protein Atlas [tissue]ENSG00000196421-C20orf204 [tissue]
IPIIPI00410427   
Protein Interaction databases
FunCoupENSG00000196421
BioGRIDC20orf204
STRING (EMBL)C20orf204
ZODIACC20orf204
Ontologies - Pathways
Huge Navigator C20orf204 [HugePedia]
snp3D : Map Gene to Disease284739
BioCentury BCIQC20orf204
ClinGenC20orf204
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284739
Chemical/Pharm GKB GenePA165392421
Clinical trialC20orf204
Miscellaneous
canSAR (ICR)C20orf204 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf204
EVEXC20orf204
GoPubMedC20orf204
iHOPC20orf204
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:54:58 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.