Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C20orf204 (chromosome 20 open reading frame 204)

Identity

Alias_namesPRR17
NCRNA00176
LINC00176
proline rich 17
non-protein coding RNA 176
long intergenic non-protein coding RNA 176
Alias_symbol (synonym)DKFZp434G015
FLJ27267
Other alias
HGNC (Hugo) C20orf204
LocusID (NCBI) 284739
Atlas_Id 79509
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64033727 and ends at 64039001 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf204   27655
Cards
Entrez_Gene (NCBI)C20orf204  284739  chromosome 20 open reading frame 204
AliasesLINC00176; NCRNA00176; PRR17
GeneCards (Weizmann)C20orf204
Ensembl hg19 (Hinxton)ENSG00000196421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196421 [Gene_View]  chr20:64033727-64039001 [Contig_View]  C20orf204 [Vega]
ICGC DataPortalENSG00000196421
TCGA cBioPortalC20orf204
AceView (NCBI)C20orf204
Genatlas (Paris)C20orf204
WikiGenes284739
SOURCE (Princeton)C20orf204
Genetics Home Reference (NIH)C20orf204
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf204  -     chr20:64033727-64039001 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf204  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblC20orf204 - 20q13.33 [CytoView hg19]  C20orf204 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIC20orf204 [Mapview hg19]  C20orf204 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130777 AK310631 AL157500 BC033342 DA111479
RefSeq transcript (Entrez)NM_001348090 NM_207349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf204
Cluster EST : UnigeneHs.97840 [ NCBI ]
CGAP (NCI)Hs.97840
Alternative Splicing GalleryENSG00000196421
Gene ExpressionC20orf204 [ NCBI-GEO ]   C20orf204 [ EBI - ARRAY_EXPRESS ]   C20orf204 [ SEEK ]   C20orf204 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf204 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284739
GTEX Portal (Tissue expression)C20orf204
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNR8
Splice isoforms : SwissVarQ6ZNR8
PhosPhoSitePlusQ6ZNR8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf204
DMDM Disease mutations284739
Blocks (Seattle)C20orf204
SuperfamilyQ6ZNR8
Human Protein AtlasENSG00000196421
Peptide AtlasQ6ZNR8
IPIIPI00410427   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNR8
IntAct (EBI)Q6ZNR8
FunCoupENSG00000196421
BioGRIDC20orf204
STRING (EMBL)C20orf204
ZODIACC20orf204
Ontologies - Pathways
QuickGOQ6ZNR8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf204
Atlas of Cancer Signalling NetworkC20orf204
Wikipedia pathwaysC20orf204
Orthology - Evolution
OrthoDB284739
GeneTree (enSembl)ENSG00000196421
Phylogenetic Trees/Animal Genes : TreeFamC20orf204
HOVERGENQ6ZNR8
HOGENOMQ6ZNR8
Homologs : HomoloGeneC20orf204
Homology/Alignments : Family Browser (UCSC)C20orf204
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf204 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf204
dbVarC20orf204
ClinVarC20orf204
1000_GenomesC20orf204 
Exome Variant ServerC20orf204
ExAC (Exome Aggregation Consortium)C20orf204 (select the gene name)
Genetic variants : HAPMAP284739
Genomic Variants (DGV)C20orf204 [DGVbeta]
DECIPHERC20orf204 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf204 
Mutations
ICGC Data PortalC20orf204 
TCGA Data PortalC20orf204 
Broad Tumor PortalC20orf204
OASIS PortalC20orf204 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC20orf204
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf204
DgiDB (Drug Gene Interaction Database)C20orf204
DoCM (Curated mutations)C20orf204 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf204 (select a term)
intoGenC20orf204
Cancer3DC20orf204(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf204
Genetic Testing Registry C20orf204
NextProtQ6ZNR8 [Medical]
TSGene284739
GENETestsC20orf204
Target ValidationC20orf204
Huge Navigator C20orf204 [HugePedia]
snp3D : Map Gene to Disease284739
BioCentury BCIQC20orf204
ClinGenC20orf204
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284739
Chemical/Pharm GKB GenePA165392421
Clinical trialC20orf204
Miscellaneous
canSAR (ICR)C20orf204 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf204
EVEXC20orf204
GoPubMedC20orf204
iHOPC20orf204
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:11 CEST 2017

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