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C20orf24 (chromosome 20 open reading frame 24)

Identity

Alias_symbol (synonym)PNAS-11
RIP5
Other alias
HGNC (Hugo) C20orf24
LocusID (NCBI) 55969
Atlas_Id 54168
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 36605734 and ends at 36612557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP32 (11q24.3) / C20orf24 (20q11.23)TBL1XR1 (3q26.32) / C20orf24 (20q11.23)ARHGAP32 11q24.3 / C20orf24 20q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf24   15870
Cards
Entrez_Gene (NCBI)C20orf24  55969  chromosome 20 open reading frame 24
AliasesPNAS-11; RIP5
GeneCards (Weizmann)C20orf24
Ensembl hg19 (Hinxton)ENSG00000101084 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101084 [Gene_View]  chr20:36605734-36612557 [Contig_View]  C20orf24 [Vega]
ICGC DataPortalENSG00000101084
TCGA cBioPortalC20orf24
AceView (NCBI)C20orf24
Genatlas (Paris)C20orf24
WikiGenes55969
SOURCE (Princeton)C20orf24
Genetics Home Reference (NIH)C20orf24
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf24  -     chr20:36605734-36612557 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf24  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblC20orf24 - 20q11.23 [CytoView hg19]  C20orf24 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIC20orf24 [Mapview hg19]  C20orf24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF112213 AF274936 AF274948 BC001871 BC004446
RefSeq transcript (Entrez)NM_001199534 NM_018840 NM_199483 NM_199484 NM_199485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf24
Cluster EST : UnigeneHs.584985 [ NCBI ]
CGAP (NCI)Hs.584985
Alternative Splicing GalleryENSG00000101084
Gene ExpressionC20orf24 [ NCBI-GEO ]   C20orf24 [ EBI - ARRAY_EXPRESS ]   C20orf24 [ SEEK ]   C20orf24 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55969
GTEX Portal (Tissue expression)C20orf24
Human Protein AtlasENSG00000101084-C20orf24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUV8
Splice isoforms : SwissVarQ9BUV8
PhosPhoSitePlusQ9BUV8
Domains : Interpro (EBI)Rab5ip    Rab5IP_fam   
Domain families : Pfam (Sanger)Rab5ip (PF07019)   
Domain families : Pfam (NCBI)pfam07019   
Conserved Domain (NCBI)C20orf24
DMDM Disease mutations55969
Blocks (Seattle)C20orf24
SuperfamilyQ9BUV8
Human Protein Atlas [tissue]ENSG00000101084-C20orf24 [tissue]
Peptide AtlasQ9BUV8
HPRD12761
IPIIPI00030898   IPI00216578   IPI00216579   IPI00216581   IPI00396969   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUV8
IntAct (EBI)Q9BUV8
FunCoupENSG00000101084
BioGRIDC20orf24
STRING (EMBL)C20orf24
ZODIACC20orf24
Ontologies - Pathways
QuickGOQ9BUV8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC20orf24
Atlas of Cancer Signalling NetworkC20orf24
Wikipedia pathwaysC20orf24
Orthology - Evolution
OrthoDB55969
GeneTree (enSembl)ENSG00000101084
Phylogenetic Trees/Animal Genes : TreeFamC20orf24
HOVERGENQ9BUV8
HOGENOMQ9BUV8
Homologs : HomoloGeneC20orf24
Homology/Alignments : Family Browser (UCSC)C20orf24
Gene fusions - Rearrangements
Fusion : MitelmanARHGAP32/C20orf24 [11q24.3/20q11.23]  [t(11;20)(q24;q11)]  
Fusion : MitelmanTBL1XR1/C20orf24 [3q26.32/20q11.23]  [t(3;20)(q26;q11)]  
Fusion: TCGA_MDACCARHGAP32 11q24.3 C20orf24 20q11.23 BRCA
Tumor Fusion PortalC20orf24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf24
dbVarC20orf24
ClinVarC20orf24
1000_GenomesC20orf24 
Exome Variant ServerC20orf24
ExAC (Exome Aggregation Consortium)ENSG00000101084
GNOMAD BrowserENSG00000101084
Genetic variants : HAPMAP55969
Genomic Variants (DGV)C20orf24 [DGVbeta]
DECIPHERC20orf24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf24 
Mutations
ICGC Data PortalC20orf24 
TCGA Data PortalC20orf24 
Broad Tumor PortalC20orf24
OASIS PortalC20orf24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C20orf24
DgiDB (Drug Gene Interaction Database)C20orf24
DoCM (Curated mutations)C20orf24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf24 (select a term)
intoGenC20orf24
Cancer3DC20orf24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC20orf24
MedgenC20orf24
Genetic Testing Registry C20orf24
NextProtQ9BUV8 [Medical]
TSGene55969
GENETestsC20orf24
Target ValidationC20orf24
Huge Navigator C20orf24 [HugePedia]
snp3D : Map Gene to Disease55969
BioCentury BCIQC20orf24
ClinGenC20orf24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55969
Chemical/Pharm GKB GenePA25740
Clinical trialC20orf24
Miscellaneous
canSAR (ICR)C20orf24 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf24
EVEXC20orf24
GoPubMedC20orf24
iHOPC20orf24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:05:28 CET 2017

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