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C20orf27 (chromosome 20 open reading frame 27)

Identity

Alias (NCBI)-
HGNC (Hugo) C20orf27
HGNC Alias symbFLJ20550
HGNC Alias namehypothetical protein LOC54976
LocusID (NCBI) 54976
Atlas_Id 61119
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3753508 and ends at 3767753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C20orf27 (20p13) / ARID5B (10q21.2)C20orf27 (20p13) / FZD7 (2q33.1)C20orf27 (20p13) / PSMD4 (1q21.3)
DARS2 (1q25.1) / C20orf27 (20p13)FBXL3 (13q22.3) / C20orf27 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C20orf27   15873
Cards
Entrez_Gene (NCBI)C20orf27    chromosome 20 open reading frame 27
Aliases
GeneCards (Weizmann)C20orf27
Ensembl hg19 (Hinxton)ENSG00000101220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101220 [Gene_View]  ENSG00000101220 [Sequence]  chr20:3753508-3767753 [Contig_View]  C20orf27 [Vega]
ICGC DataPortalENSG00000101220
TCGA cBioPortalC20orf27
AceView (NCBI)C20orf27
Genatlas (Paris)C20orf27
SOURCE (Princeton)C20orf27
Genetics Home Reference (NIH)C20orf27
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf27  -     chr20:3753508-3767753 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf27  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathC20orf27 - 20p13 [CytoView hg19]  C20orf27 - 20p13 [CytoView hg38]
ImmunoBaseENSG00000101220
Genome Data Viewer NCBIC20orf27 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000557 AK024220 AK097645 AK124341 AK125202
RefSeq transcript (Entrez)NM_001039140 NM_001258429 NM_001258430 NM_017874
Consensus coding sequences : CCDS (NCBI)C20orf27
Gene ExpressionC20orf27 [ NCBI-GEO ]   C20orf27 [ EBI - ARRAY_EXPRESS ]   C20orf27 [ SEEK ]   C20orf27 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf27 [ Firebrowse - Broad ]
GenevisibleExpression of C20orf27 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54976
GTEX Portal (Tissue expression)C20orf27
Human Protein AtlasENSG00000101220-C20orf27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZN8
PhosPhoSitePlusQ9GZN8
Domains : Interpro (EBI)UPF0687   
Domain families : Pfam (Sanger)DUF4517 (PF15006)   
Domain families : Pfam (NCBI)pfam15006   
Conserved Domain (NCBI)C20orf27
SuperfamilyQ9GZN8
AlphaFold pdb e-kbQ9GZN8   
Human Protein Atlas [tissue]ENSG00000101220-C20orf27 [tissue]
HPRD16648
Protein Interaction databases
DIP (DOE-UCLA)Q9GZN8
IntAct (EBI)Q9GZN8
BioGRIDC20orf27
STRING (EMBL)C20orf27
ZODIACC20orf27
Ontologies - Pathways
QuickGOQ9GZN8
Ontology : AmiGOcellular_component  protein phosphatase 1 binding  positive regulation of transforming growth factor beta receptor signaling pathway  positive regulation of NIK/NF-kappaB signaling  
Ontology : EGO-EBIcellular_component  protein phosphatase 1 binding  positive regulation of transforming growth factor beta receptor signaling pathway  positive regulation of NIK/NF-kappaB signaling  
NDEx NetworkC20orf27
Atlas of Cancer Signalling NetworkC20orf27
Wikipedia pathwaysC20orf27
Orthology - Evolution
OrthoDB54976
GeneTree (enSembl)ENSG00000101220
Phylogenetic Trees/Animal Genes : TreeFamC20orf27
Homologs : HomoloGeneC20orf27
Homology/Alignments : Family Browser (UCSC)C20orf27
Gene fusions - Rearrangements
Fusion : QuiverC20orf27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf27
dbVarC20orf27
ClinVarC20orf27
MonarchC20orf27
1000_GenomesC20orf27 
Exome Variant ServerC20orf27
GNOMAD BrowserENSG00000101220
Varsome BrowserC20orf27
ACMGC20orf27 variants
VarityQ9GZN8
Genomic Variants (DGV)C20orf27 [DGVbeta]
DECIPHERC20orf27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf27 
Mutations
ICGC Data PortalC20orf27 
TCGA Data PortalC20orf27 
Broad Tumor PortalC20orf27
OASIS PortalC20orf27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf27  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC20orf27
Mutations and Diseases : HGMDC20orf27
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC20orf27
DgiDB (Drug Gene Interaction Database)C20orf27
DoCM (Curated mutations)C20orf27
CIViC (Clinical Interpretations of Variants in Cancer)C20orf27
Cancer3DC20orf27
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC20orf27
MedgenC20orf27
Genetic Testing Registry C20orf27
NextProtQ9GZN8 [Medical]
GENETestsC20orf27
Target ValidationC20orf27
Huge Navigator C20orf27 [HugePedia]
ClinGenC20orf27
Clinical trials, drugs, therapy
MyCancerGenomeC20orf27
Protein Interactions : CTDC20orf27
Pharm GKB GenePA25742
PharosQ9GZN8
Clinical trialC20orf27
Miscellaneous
canSAR (ICR)C20orf27
HarmonizomeC20orf27
DataMed IndexC20orf27
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC20orf27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:09 CEST 2021

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