Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C20orf27 (chromosome 20 open reading frame 27)

Identity

Alias_symbol (synonym)FLJ20550
Other alias-
HGNC (Hugo) C20orf27
LocusID (NCBI) 54976
Atlas_Id 61119
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3753499 and ends at 3767805 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C20orf27 (20p13) / ARID5B (10q21.2)C20orf27 (20p13) / FZD7 (2q33.1)C20orf27 (20p13) / PSMD4 (1q21.3)
DARS2 (1q25.1) / C20orf27 (20p13)FBXL3 (13q22.3) / C20orf27 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf27   15873
Cards
Entrez_Gene (NCBI)C20orf27  54976  chromosome 20 open reading frame 27
Aliases
GeneCards (Weizmann)C20orf27
Ensembl hg19 (Hinxton)ENSG00000101220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101220 [Gene_View]  chr20:3753499-3767805 [Contig_View]  C20orf27 [Vega]
ICGC DataPortalENSG00000101220
TCGA cBioPortalC20orf27
AceView (NCBI)C20orf27
Genatlas (Paris)C20orf27
WikiGenes54976
SOURCE (Princeton)C20orf27
Genetics Home Reference (NIH)C20orf27
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf27  -     chr20:3753499-3767805 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf27  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblC20orf27 - 20p13 [CytoView hg19]  C20orf27 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIC20orf27 [Mapview hg19]  C20orf27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000557 AK024220 AK097645 AK124341 AK125202
RefSeq transcript (Entrez)NM_001039140 NM_001258429 NM_001258430 NM_017874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf27
Cluster EST : UnigeneHs.274422 [ NCBI ]
CGAP (NCI)Hs.274422
Alternative Splicing GalleryENSG00000101220
Gene ExpressionC20orf27 [ NCBI-GEO ]   C20orf27 [ EBI - ARRAY_EXPRESS ]   C20orf27 [ SEEK ]   C20orf27 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54976
GTEX Portal (Tissue expression)C20orf27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZN8
Splice isoforms : SwissVarQ9GZN8
PhosPhoSitePlusQ9GZN8
Domains : Interpro (EBI)UPF0687   
Domain families : Pfam (Sanger)DUF4517 (PF15006)   
Domain families : Pfam (NCBI)pfam15006   
Conserved Domain (NCBI)C20orf27
DMDM Disease mutations54976
Blocks (Seattle)C20orf27
SuperfamilyQ9GZN8
Human Protein AtlasENSG00000101220
Peptide AtlasQ9GZN8
HPRD16648
IPIIPI00101095   IPI00552634   IPI00395779   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZN8
IntAct (EBI)Q9GZN8
FunCoupENSG00000101220
BioGRIDC20orf27
STRING (EMBL)C20orf27
ZODIACC20orf27
Ontologies - Pathways
QuickGOQ9GZN8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC20orf27
Atlas of Cancer Signalling NetworkC20orf27
Wikipedia pathwaysC20orf27
Orthology - Evolution
OrthoDB54976
GeneTree (enSembl)ENSG00000101220
Phylogenetic Trees/Animal Genes : TreeFamC20orf27
HOVERGENQ9GZN8
HOGENOMQ9GZN8
Homologs : HomoloGeneC20orf27
Homology/Alignments : Family Browser (UCSC)C20orf27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf27
dbVarC20orf27
ClinVarC20orf27
1000_GenomesC20orf27 
Exome Variant ServerC20orf27
ExAC (Exome Aggregation Consortium)C20orf27 (select the gene name)
Genetic variants : HAPMAP54976
Genomic Variants (DGV)C20orf27 [DGVbeta]
DECIPHERC20orf27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf27 
Mutations
ICGC Data PortalC20orf27 
TCGA Data PortalC20orf27 
Broad Tumor PortalC20orf27
OASIS PortalC20orf27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf27
DgiDB (Drug Gene Interaction Database)C20orf27
DoCM (Curated mutations)C20orf27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf27 (select a term)
intoGenC20orf27
Cancer3DC20orf27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf27
Genetic Testing Registry C20orf27
NextProtQ9GZN8 [Medical]
TSGene54976
GENETestsC20orf27
Target ValidationC20orf27
Huge Navigator C20orf27 [HugePedia]
snp3D : Map Gene to Disease54976
BioCentury BCIQC20orf27
ClinGenC20orf27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54976
Chemical/Pharm GKB GenePA25742
Clinical trialC20orf27
Miscellaneous
canSAR (ICR)C20orf27 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf27
EVEXC20orf27
GoPubMedC20orf27
iHOPC20orf27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.