Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C20orf62 (chromosome 20 open reading frame 62)

Identity

Other aliasdJ1013A22.3
HGNC (Hugo) C20orf62
LocusID (NCBI) 140834
Atlas_Id 61121
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 43090403 and ends at 43093984 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf62   16195
Cards
Entrez_Gene (NCBI)C20orf62  140834  chromosome 20 open reading frame 62
AliasesdJ1013A22.3
GeneCards (Weizmann)C20orf62
Ensembl hg19 (Hinxton)ENSG00000168746 [Gene_View]  chr20:43090403-43093984 [Contig_View]  C20orf62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168746 [Gene_View]  chr20:43090403-43093984 [Contig_View]  C20orf62 [Vega]
ICGC DataPortalENSG00000168746
TCGA cBioPortalC20orf62
AceView (NCBI)C20orf62
Genatlas (Paris)C20orf62
WikiGenes140834
SOURCE (Princeton)C20orf62
Genetics Home Reference (NIH)C20orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C20orf62  -     chr20:43090403-43093984 -  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C20orf62  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblC20orf62 - 20q13.12 [CytoView hg19]  C20orf62 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIC20orf62 [Mapview hg19]  C20orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030259 LN608757 LN608758
RefSeq transcript (Entrez)NM_001287807
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)C20orf62
Cluster EST : UnigeneHs.357589 [ NCBI ]
CGAP (NCI)Hs.357589
Alternative Splicing GalleryENSG00000168746
Gene ExpressionC20orf62 [ NCBI-GEO ]   C20orf62 [ EBI - ARRAY_EXPRESS ]   C20orf62 [ SEEK ]   C20orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140834
GTEX Portal (Tissue expression)C20orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4KN68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4KN68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4KN68
Splice isoforms : SwissVarQ4KN68
PhosPhoSitePlusQ4KN68
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf62
DMDM Disease mutations140834
Blocks (Seattle)C20orf62
SuperfamilyQ4KN68
Human Protein AtlasENSG00000168746
Peptide AtlasQ4KN68
HPRD18555
IPIIPI00657844   IPI00299576   
Protein Interaction databases
DIP (DOE-UCLA)Q4KN68
IntAct (EBI)Q4KN68
FunCoupENSG00000168746
BioGRIDC20orf62
STRING (EMBL)C20orf62
ZODIACC20orf62
Ontologies - Pathways
QuickGOQ4KN68
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf62
Atlas of Cancer Signalling NetworkC20orf62
Wikipedia pathwaysC20orf62
Orthology - Evolution
OrthoDB140834
GeneTree (enSembl)ENSG00000168746
Phylogenetic Trees/Animal Genes : TreeFamC20orf62
HOVERGENQ4KN68
HOGENOMQ4KN68
Homologs : HomoloGeneC20orf62
Homology/Alignments : Family Browser (UCSC)C20orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf62
dbVarC20orf62
ClinVarC20orf62
1000_GenomesC20orf62 
Exome Variant ServerC20orf62
ExAC (Exome Aggregation Consortium)C20orf62 (select the gene name)
Genetic variants : HAPMAP140834
Genomic Variants (DGV)C20orf62 [DGVbeta]
DECIPHER (Syndromes)20:43090403-43093984  ENSG00000168746
CONAN: Copy Number AnalysisC20orf62 
Mutations
ICGC Data PortalC20orf62 
TCGA Data PortalC20orf62 
Broad Tumor PortalC20orf62
OASIS PortalC20orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf62
BioMutasearch C20orf62
DgiDB (Drug Gene Interaction Database)C20orf62
DoCM (Curated mutations)C20orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf62 (select a term)
intoGenC20orf62
Cancer3DC20orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf62
Genetic Testing Registry C20orf62
NextProtQ4KN68 [Medical]
TSGene140834
GENETestsC20orf62
Huge Navigator C20orf62 [HugePedia]
snp3D : Map Gene to Disease140834
BioCentury BCIQC20orf62
ClinGenC20orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140834
Chemical/Pharm GKB GenePA25773
Clinical trialC20orf62
Miscellaneous
canSAR (ICR)C20orf62 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf62
EVEXC20orf62
GoPubMedC20orf62
iHOPC20orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:08 CET 2017

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