Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C20orf78 (chromosome 20 open reading frame 78)

Identity

Alias_symbol (synonym)dJ1068E13.1
Other alias
HGNC (Hugo) C20orf78
LocusID (NCBI) 100128496
Atlas_Id 61122
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18809351 and ends at 18830203 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf78   16210
Cards
Entrez_Gene (NCBI)C20orf78  100128496  chromosome 20 open reading frame 78
AliasesdJ1068E13.1
GeneCards (Weizmann)C20orf78
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:18809351-18830203 [Contig_View]  C20orf78 [Vega]
TCGA cBioPortalC20orf78
AceView (NCBI)C20orf78
Genatlas (Paris)C20orf78
WikiGenes100128496
SOURCE (Princeton)C20orf78
Genetics Home Reference (NIH)C20orf78
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf78  -     chr20:18809351-18830203 -  20p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf78  -     20p11.23   [Description]    (hg19-Feb_2009)
EnsemblC20orf78 - 20p11.23 [CytoView hg19]  C20orf78 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBIC20orf78 [Mapview hg19]  C20orf78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW118618 BX112808 BX334499 CR738909 HY016900
RefSeq transcript (Entrez)NM_001242671 NM_001302818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf78
Cluster EST : UnigeneHs.664484 [ NCBI ]
CGAP (NCI)Hs.664484
Gene ExpressionC20orf78 [ NCBI-GEO ]   C20orf78 [ EBI - ARRAY_EXPRESS ]   C20orf78 [ SEEK ]   C20orf78 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128496
GTEX Portal (Tissue expression)C20orf78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR46
Splice isoforms : SwissVarQ9BR46
PhosPhoSitePlusQ9BR46
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C20orf78
DMDM Disease mutations100128496
Blocks (Seattle)C20orf78
SuperfamilyQ9BR46
Peptide AtlasQ9BR46
IPIIPI00028704   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR46
IntAct (EBI)Q9BR46
BioGRIDC20orf78
STRING (EMBL)C20orf78
ZODIACC20orf78
Ontologies - Pathways
QuickGOQ9BR46
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf78
Atlas of Cancer Signalling NetworkC20orf78
Wikipedia pathwaysC20orf78
Orthology - Evolution
OrthoDB100128496
Phylogenetic Trees/Animal Genes : TreeFamC20orf78
HOVERGENQ9BR46
HOGENOMQ9BR46
Homologs : HomoloGeneC20orf78
Homology/Alignments : Family Browser (UCSC)C20orf78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf78
dbVarC20orf78
ClinVarC20orf78
1000_GenomesC20orf78 
Exome Variant ServerC20orf78
ExAC (Exome Aggregation Consortium)C20orf78 (select the gene name)
Genetic variants : HAPMAP100128496
Genomic Variants (DGV)C20orf78 [DGVbeta]
DECIPHERC20orf78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf78 
Mutations
ICGC Data PortalC20orf78 
TCGA Data PortalC20orf78 
Broad Tumor PortalC20orf78
OASIS PortalC20orf78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf78
DgiDB (Drug Gene Interaction Database)C20orf78
DoCM (Curated mutations)C20orf78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf78 (select a term)
intoGenC20orf78
Cancer3DC20orf78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf78
Genetic Testing Registry C20orf78
NextProtQ9BR46 [Medical]
TSGene100128496
GENETestsC20orf78
Target ValidationC20orf78
Huge Navigator C20orf78 [HugePedia]
snp3D : Map Gene to Disease100128496
BioCentury BCIQC20orf78
ClinGenC20orf78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128496
Chemical/Pharm GKB GenePA25787
Clinical trialC20orf78
Miscellaneous
canSAR (ICR)C20orf78 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf78
EVEXC20orf78
GoPubMedC20orf78
iHOPC20orf78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:11 CEST 2017

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