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C20orf85 (chromosome 20 open reading frame 85)

Identity

Alias_symbol (synonym)bA196N14.1
LLC1
Other alias
HGNC (Hugo) C20orf85
LocusID (NCBI) 128602
Atlas_Id 49765
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 58150927 and ends at 58161127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf85   16216
Cards
Entrez_Gene (NCBI)C20orf85  128602  chromosome 20 open reading frame 85
AliasesLLC1; bA196N14.1
GeneCards (Weizmann)C20orf85
Ensembl hg19 (Hinxton)ENSG00000124237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124237 [Gene_View]  ENSG00000124237 [Sequence]  chr20:58150927-58161127 [Contig_View]  C20orf85 [Vega]
ICGC DataPortalENSG00000124237
TCGA cBioPortalC20orf85
AceView (NCBI)C20orf85
Genatlas (Paris)C20orf85
WikiGenes128602
SOURCE (Princeton)C20orf85
Genetics Home Reference (NIH)C20orf85
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf85  -     chr20:58150927-58161127 +  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf85  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblC20orf85 - 20q13.32 [CytoView hg19]  C20orf85 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBIC20orf85 [Mapview hg19]  C20orf85 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035405 BU676204 BX093883
RefSeq transcript (Entrez)NM_178456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf85
Cluster EST : UnigeneHs.43977 [ NCBI ]
CGAP (NCI)Hs.43977
Alternative Splicing GalleryENSG00000124237
Gene ExpressionC20orf85 [ NCBI-GEO ]   C20orf85 [ EBI - ARRAY_EXPRESS ]   C20orf85 [ SEEK ]   C20orf85 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128602
GTEX Portal (Tissue expression)C20orf85
Human Protein AtlasENSG00000124237-C20orf85 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1P6
Splice isoforms : SwissVarQ9H1P6
PhosPhoSitePlusQ9H1P6
Domains : Interpro (EBI)Uncharacterised_C20orf85   
Domain families : Pfam (Sanger)LLC1 (PF14945)   
Domain families : Pfam (NCBI)pfam14945   
Domain structure : Prodom (Prabi Lyon)C20orf85_euk (PD297655)   
Conserved Domain (NCBI)C20orf85
DMDM Disease mutations128602
Blocks (Seattle)C20orf85
SuperfamilyQ9H1P6
Human Protein Atlas [tissue]ENSG00000124237-C20orf85 [tissue]
Peptide AtlasQ9H1P6
HPRD12787
IPIIPI00011788   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1P6
IntAct (EBI)Q9H1P6
FunCoupENSG00000124237
BioGRIDC20orf85
STRING (EMBL)C20orf85
ZODIACC20orf85
Ontologies - Pathways
QuickGOQ9H1P6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC20orf85
Atlas of Cancer Signalling NetworkC20orf85
Wikipedia pathwaysC20orf85
Orthology - Evolution
OrthoDB128602
GeneTree (enSembl)ENSG00000124237
Phylogenetic Trees/Animal Genes : TreeFamC20orf85
HOVERGENQ9H1P6
HOGENOMQ9H1P6
Homologs : HomoloGeneC20orf85
Homology/Alignments : Family Browser (UCSC)C20orf85
Gene fusions - Rearrangements
Fusion : QuiverC20orf85
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf85
dbVarC20orf85
ClinVarC20orf85
1000_GenomesC20orf85 
Exome Variant ServerC20orf85
ExAC (Exome Aggregation Consortium)ENSG00000124237
GNOMAD BrowserENSG00000124237
Varsome BrowserC20orf85
Genetic variants : HAPMAP128602
Genomic Variants (DGV)C20orf85 [DGVbeta]
DECIPHERC20orf85 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf85 
Mutations
ICGC Data PortalC20orf85 
TCGA Data PortalC20orf85 
Broad Tumor PortalC20orf85
OASIS PortalC20orf85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf85
DgiDB (Drug Gene Interaction Database)C20orf85
DoCM (Curated mutations)C20orf85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf85 (select a term)
intoGenC20orf85
Cancer3DC20orf85(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC20orf85
MedgenC20orf85
Genetic Testing Registry C20orf85
NextProtQ9H1P6 [Medical]
TSGene128602
GENETestsC20orf85
Target ValidationC20orf85
Huge Navigator C20orf85 [HugePedia]
snp3D : Map Gene to Disease128602
BioCentury BCIQC20orf85
ClinGenC20orf85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128602
Chemical/Pharm GKB GenePA25793
Clinical trialC20orf85
Miscellaneous
canSAR (ICR)C20orf85 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf85
EVEXC20orf85
GoPubMedC20orf85
iHOPC20orf85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:54:58 CET 2018

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