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C20orf96 (chromosome 20 open reading frame 96)

Identity

Alias_symbol (synonym)dJ1103G7.2
Other alias
HGNC (Hugo) C20orf96
LocusID (NCBI) 140680
Atlas_Id 61123
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 270863 and ends at 290778 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C20orf96 (20p13) / KMT2B (19q13.12)C20orf96 (20p13) / RAB12 (18p11.22)EFNA4 (1q22) / C20orf96 (20p13)
MYH9 (22q12.3) / C20orf96 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C20orf96   16227
Cards
Entrez_Gene (NCBI)C20orf96  140680  chromosome 20 open reading frame 96
AliasesdJ1103G7.2
GeneCards (Weizmann)C20orf96
Ensembl hg19 (Hinxton)ENSG00000196476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196476 [Gene_View]  chr20:270863-290778 [Contig_View]  C20orf96 [Vega]
ICGC DataPortalENSG00000196476
TCGA cBioPortalC20orf96
AceView (NCBI)C20orf96
Genatlas (Paris)C20orf96
WikiGenes140680
SOURCE (Princeton)C20orf96
Genetics Home Reference (NIH)C20orf96
Genomic and cartography
GoldenPath hg38 (UCSC)C20orf96  -     chr20:270863-290778 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C20orf96  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblC20orf96 - 20p13 [CytoView hg19]  C20orf96 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIC20orf96 [Mapview hg19]  C20orf96 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA921838 AK091924 AK097394 AK302223 AK304526
RefSeq transcript (Entrez)NM_080571 NM_153269
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C20orf96
Cluster EST : UnigeneHs.348112 [ NCBI ]
CGAP (NCI)Hs.348112
Alternative Splicing GalleryENSG00000196476
Gene ExpressionC20orf96 [ NCBI-GEO ]   C20orf96 [ EBI - ARRAY_EXPRESS ]   C20orf96 [ SEEK ]   C20orf96 [ MEM ]
Gene Expression Viewer (FireBrowse)C20orf96 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140680
GTEX Portal (Tissue expression)C20orf96
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUD7
Splice isoforms : SwissVarQ9NUD7
PhosPhoSitePlusQ9NUD7
Domains : Interpro (EBI)DUF4618   
Domain families : Pfam (Sanger)DUF4618 (PF15397)   
Domain families : Pfam (NCBI)pfam15397   
Conserved Domain (NCBI)C20orf96
DMDM Disease mutations140680
Blocks (Seattle)C20orf96
SuperfamilyQ9NUD7
Human Protein AtlasENSG00000196476
Peptide AtlasQ9NUD7
HPRD12790
IPIIPI00300683   IPI00922758   IPI00423379   IPI00552145   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUD7
IntAct (EBI)Q9NUD7
FunCoupENSG00000196476
BioGRIDC20orf96
STRING (EMBL)C20orf96
ZODIACC20orf96
Ontologies - Pathways
QuickGOQ9NUD7
Ontology : AmiGOoxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIoxidoreductase activity  oxidation-reduction process  
NDEx NetworkC20orf96
Atlas of Cancer Signalling NetworkC20orf96
Wikipedia pathwaysC20orf96
Orthology - Evolution
OrthoDB140680
GeneTree (enSembl)ENSG00000196476
Phylogenetic Trees/Animal Genes : TreeFamC20orf96
HOVERGENQ9NUD7
HOGENOMQ9NUD7
Homologs : HomoloGeneC20orf96
Homology/Alignments : Family Browser (UCSC)C20orf96
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC20orf96 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C20orf96
dbVarC20orf96
ClinVarC20orf96
1000_GenomesC20orf96 
Exome Variant ServerC20orf96
ExAC (Exome Aggregation Consortium)C20orf96 (select the gene name)
Genetic variants : HAPMAP140680
Genomic Variants (DGV)C20orf96 [DGVbeta]
DECIPHERC20orf96 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC20orf96 
Mutations
ICGC Data PortalC20orf96 
TCGA Data PortalC20orf96 
Broad Tumor PortalC20orf96
OASIS PortalC20orf96 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC20orf96  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC20orf96
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C20orf96
DgiDB (Drug Gene Interaction Database)C20orf96
DoCM (Curated mutations)C20orf96 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C20orf96 (select a term)
intoGenC20orf96
Cancer3DC20orf96(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC20orf96
Genetic Testing Registry C20orf96
NextProtQ9NUD7 [Medical]
TSGene140680
GENETestsC20orf96
Target ValidationC20orf96
Huge Navigator C20orf96 [HugePedia]
snp3D : Map Gene to Disease140680
BioCentury BCIQC20orf96
ClinGenC20orf96
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140680
Chemical/Pharm GKB GenePA25803
Clinical trialC20orf96
Miscellaneous
canSAR (ICR)C20orf96 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC20orf96
EVEXC20orf96
GoPubMedC20orf96
iHOPC20orf96
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:12 CEST 2017

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