Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C21orf140 (chromosome 21 open reading frame 140)

Identity

Other alias-
HGNC (Hugo) C21orf140
LocusID (NCBI) 101928147
Atlas_Id 61124
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 34400112 and ends at 34401072 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf140   39602
Cards
Entrez_Gene (NCBI)C21orf140  101928147  chromosome 21 open reading frame 140
Aliases
GeneCards (Weizmann)C21orf140
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:34400112-34401072 [Contig_View]  C21orf140 [Vega]
TCGA cBioPortalC21orf140
AceView (NCBI)C21orf140
Genatlas (Paris)C21orf140
WikiGenes101928147
SOURCE (Princeton)C21orf140
Genetics Home Reference (NIH)C21orf140
Genomic and cartography
GoldenPath hg38 (UCSC)C21orf140  -     chr21:34400112-34401072 -  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C21orf140  -     21q22.12   [Description]    (hg19-Feb_2009)
EnsemblC21orf140 - 21q22.12 [CytoView hg19]  C21orf140 - 21q22.12 [CytoView hg38]
Mapping of homologs : NCBIC21orf140 [Mapview hg19]  C21orf140 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA860112
RefSeq transcript (Entrez)NM_001282537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C21orf140
Cluster EST : UnigeneHs.303798 [ NCBI ]
CGAP (NCI)Hs.303798
Gene ExpressionC21orf140 [ NCBI-GEO ]   C21orf140 [ EBI - ARRAY_EXPRESS ]   C21orf140 [ SEEK ]   C21orf140 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf140 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928147
GTEX Portal (Tissue expression)C21orf140
Protein : pattern, domain, 3D structure
UniProt/SwissProtB9A014   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB9A014  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB9A014
Splice isoforms : SwissVarB9A014
PhosPhoSitePlusB9A014
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C21orf140
DMDM Disease mutations101928147
Blocks (Seattle)C21orf140
SuperfamilyB9A014
Peptide AtlasB9A014
Protein Interaction databases
DIP (DOE-UCLA)B9A014
IntAct (EBI)B9A014
BioGRIDC21orf140
STRING (EMBL)C21orf140
ZODIACC21orf140
Ontologies - Pathways
QuickGOB9A014
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC21orf140
Atlas of Cancer Signalling NetworkC21orf140
Wikipedia pathwaysC21orf140
Orthology - Evolution
OrthoDB101928147
Phylogenetic Trees/Animal Genes : TreeFamC21orf140
HOVERGENB9A014
HOGENOMB9A014
Homologs : HomoloGeneC21orf140
Homology/Alignments : Family Browser (UCSC)C21orf140
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf140 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf140
dbVarC21orf140
ClinVarC21orf140
1000_GenomesC21orf140 
Exome Variant ServerC21orf140
ExAC (Exome Aggregation Consortium)C21orf140 (select the gene name)
Genetic variants : HAPMAP101928147
Genomic Variants (DGV)C21orf140 [DGVbeta]
DECIPHERC21orf140 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC21orf140 
Mutations
ICGC Data PortalC21orf140 
TCGA Data PortalC21orf140 
Broad Tumor PortalC21orf140
OASIS PortalC21orf140 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC21orf140
BioMutasearch C21orf140
DgiDB (Drug Gene Interaction Database)C21orf140
DoCM (Curated mutations)C21orf140 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf140 (select a term)
intoGenC21orf140
Cancer3DC21orf140(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC21orf140
Genetic Testing Registry C21orf140
NextProtB9A014 [Medical]
TSGene101928147
GENETestsC21orf140
Target ValidationC21orf140
Huge Navigator C21orf140 [HugePedia]
snp3D : Map Gene to Disease101928147
BioCentury BCIQC21orf140
ClinGenC21orf140
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928147
Chemical/Pharm GKB GenePA166123674
Clinical trialC21orf140
Miscellaneous
canSAR (ICR)C21orf140 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf140
EVEXC21orf140
GoPubMedC21orf140
iHOPC21orf140
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:12 CEST 2017

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