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C21orf33 (chromosome 21 open reading frame 33)

Identity

Alias_symbol (synonym)KNP-Ia
GT335
ES1
HES1
D21S2048E
KNPI
KNPH
KNP-I
Other aliasGATD3
HGNC (Hugo) C21orf33
LocusID (NCBI) 8209
Atlas_Id 883
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44133612 and ends at 44141417 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C21orf33 (21q22.3) / CAPNS1 (19q13.12)C21orf33 (21q22.3) / TAZ (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf33   1273
Cards
Entrez_Gene (NCBI)C21orf33  8209  chromosome 21 open reading frame 33
AliasesES1; GATD3; GT335; HES1; 
KNPH; KNPI
GeneCards (Weizmann)C21orf33
Ensembl hg19 (Hinxton)ENSG00000160221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160221 [Gene_View]  chr21:44133612-44141417 [Contig_View]  C21orf33 [Vega]
ICGC DataPortalENSG00000160221
TCGA cBioPortalC21orf33
AceView (NCBI)C21orf33
Genatlas (Paris)C21orf33
WikiGenes8209
SOURCE (Princeton)C21orf33
Genetics Home Reference (NIH)C21orf33
Genomic and cartography
GoldenPath hg38 (UCSC)C21orf33  -     chr21:44133612-44141417 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C21orf33  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblC21orf33 - 21q22.3 [CytoView hg19]  C21orf33 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIC21orf33 [Mapview hg19]  C21orf33 [Mapview hg38]
OMIM601659   
Gene and transcription
Genbank (Entrez)AA045757 AW292582 BC002370 BC003587 BI196781
RefSeq transcript (Entrez)NM_001320383 NM_001320384 NM_004649 NM_198155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C21orf33
Cluster EST : UnigeneHs.413482 [ NCBI ]
CGAP (NCI)Hs.413482
Alternative Splicing GalleryENSG00000160221
Gene ExpressionC21orf33 [ NCBI-GEO ]   C21orf33 [ EBI - ARRAY_EXPRESS ]   C21orf33 [ SEEK ]   C21orf33 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8209
GTEX Portal (Tissue expression)C21orf33
Human Protein AtlasENSG00000160221-C21orf33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30042   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30042  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30042
Splice isoforms : SwissVarP30042
PhosPhoSitePlusP30042
Domains : Interpro (EBI)Class_I_gatase-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C21orf33
DMDM Disease mutations8209
Blocks (Seattle)C21orf33
SuperfamilyP30042
Human Protein Atlas [tissue]ENSG00000160221-C21orf33 [tissue]
Peptide AtlasP30042
HPRD09044
IPIIPI00024913   IPI00218482   IPI00795385   IPI00794316   IPI00793677   IPI00798025   
Protein Interaction databases
DIP (DOE-UCLA)P30042
IntAct (EBI)P30042
FunCoupENSG00000160221
BioGRIDC21orf33
STRING (EMBL)C21orf33
ZODIACC21orf33
Ontologies - Pathways
QuickGOP30042
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC21orf33
Atlas of Cancer Signalling NetworkC21orf33
Wikipedia pathwaysC21orf33
Orthology - Evolution
OrthoDB8209
GeneTree (enSembl)ENSG00000160221
Phylogenetic Trees/Animal Genes : TreeFamC21orf33
HOVERGENP30042
HOGENOMP30042
Homologs : HomoloGeneC21orf33
Homology/Alignments : Family Browser (UCSC)C21orf33
Gene fusions - Rearrangements
Fusion: Tumor Portal C21orf33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf33
dbVarC21orf33
ClinVarC21orf33
1000_GenomesC21orf33 
Exome Variant ServerC21orf33
ExAC (Exome Aggregation Consortium)ENSG00000160221
GNOMAD BrowserENSG00000160221
Genetic variants : HAPMAP8209
Genomic Variants (DGV)C21orf33 [DGVbeta]
DECIPHERC21orf33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC21orf33 
Mutations
ICGC Data PortalC21orf33 
TCGA Data PortalC21orf33 
Broad Tumor PortalC21orf33
OASIS PortalC21orf33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC21orf33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC21orf33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C21orf33
DgiDB (Drug Gene Interaction Database)C21orf33
DoCM (Curated mutations)C21orf33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf33 (select a term)
intoGenC21orf33
Cancer3DC21orf33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601659   
Orphanet
MedgenC21orf33
Genetic Testing Registry C21orf33
NextProtP30042 [Medical]
TSGene8209
GENETestsC21orf33
Target ValidationC21orf33
Huge Navigator C21orf33 [HugePedia]
snp3D : Map Gene to Disease8209
BioCentury BCIQC21orf33
ClinGenC21orf33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8209
Chemical/Pharm GKB GenePA25828
Clinical trialC21orf33
Miscellaneous
canSAR (ICR)C21orf33 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf33
EVEXC21orf33
GoPubMedC21orf33
iHOPC21orf33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:42:36 CET 2017

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