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C21orf58 (chromosome 21 open reading frame 58)

Identity

Other alias-
HGNC (Hugo) C21orf58
LocusID (NCBI) 54058
Atlas_Id 61126
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 47720344 and ends at 47740739 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C21orf58 (21q22.3) / C21orf58 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf58   1300
Cards
Entrez_Gene (NCBI)C21orf58  54058  chromosome 21 open reading frame 58
Aliases
GeneCards (Weizmann)C21orf58
Ensembl hg19 (Hinxton)ENSG00000160298 [Gene_View]  chr21:47720344-47740739 [Contig_View]  C21orf58 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160298 [Gene_View]  chr21:47720344-47740739 [Contig_View]  C21orf58 [Vega]
ICGC DataPortalENSG00000160298
TCGA cBioPortalC21orf58
AceView (NCBI)C21orf58
Genatlas (Paris)C21orf58
WikiGenes54058
SOURCE (Princeton)C21orf58
Genetics Home Reference (NIH)C21orf58
Genomic and cartography
GoldenPath hg19 (UCSC)C21orf58  -     chr21:47720344-47740739 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C21orf58  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblC21orf58 - 21q22.3 [CytoView hg19]  C21orf58 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIC21orf58 [Mapview hg19]  C21orf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056387 AK096641 AK098098 AY039243 AY039244
RefSeq transcript (Entrez)NM_001286462 NM_001286463 NM_001286476 NM_001286477 NM_058180 NM_199071
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)C21orf58
Cluster EST : UnigeneHs.744525 [ NCBI ]
CGAP (NCI)Hs.744525
Alternative Splicing GalleryENSG00000160298
Gene ExpressionC21orf58 [ NCBI-GEO ]   C21orf58 [ EBI - ARRAY_EXPRESS ]   C21orf58 [ SEEK ]   C21orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54058
GTEX Portal (Tissue expression)C21orf58
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58505   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58505  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58505
Splice isoforms : SwissVarP58505
PhosPhoSitePlusP58505
Domains : Interpro (EBI)DUF4587   
Domain families : Pfam (Sanger)DUF4587 (PF15248)   
Domain families : Pfam (NCBI)pfam15248   
Conserved Domain (NCBI)C21orf58
DMDM Disease mutations54058
Blocks (Seattle)C21orf58
SuperfamilyP58505
Human Protein AtlasENSG00000160298
Peptide AtlasP58505
HPRD10755
IPIIPI00396359   IPI00291921   IPI00396120   IPI00784552   IPI00794903   IPI00942285   IPI00925862   
Protein Interaction databases
DIP (DOE-UCLA)P58505
IntAct (EBI)P58505
FunCoupENSG00000160298
BioGRIDC21orf58
STRING (EMBL)C21orf58
ZODIACC21orf58
Ontologies - Pathways
QuickGOP58505
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC21orf58
Atlas of Cancer Signalling NetworkC21orf58
Wikipedia pathwaysC21orf58
Orthology - Evolution
OrthoDB54058
GeneTree (enSembl)ENSG00000160298
Phylogenetic Trees/Animal Genes : TreeFamC21orf58
HOVERGENP58505
HOGENOMP58505
Homologs : HomoloGeneC21orf58
Homology/Alignments : Family Browser (UCSC)C21orf58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf58
dbVarC21orf58
ClinVarC21orf58
1000_GenomesC21orf58 
Exome Variant ServerC21orf58
ExAC (Exome Aggregation Consortium)C21orf58 (select the gene name)
Genetic variants : HAPMAP54058
Genomic Variants (DGV)C21orf58 [DGVbeta]
DECIPHER (Syndromes)21:47720344-47740739  ENSG00000160298
CONAN: Copy Number AnalysisC21orf58 
Mutations
ICGC Data PortalC21orf58 
TCGA Data PortalC21orf58 
Broad Tumor PortalC21orf58
OASIS PortalC21orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC21orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC21orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C21orf58
DgiDB (Drug Gene Interaction Database)C21orf58
DoCM (Curated mutations)C21orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf58 (select a term)
intoGenC21orf58
Cancer3DC21orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC21orf58
Genetic Testing Registry C21orf58
NextProtP58505 [Medical]
TSGene54058
GENETestsC21orf58
Huge Navigator C21orf58 [HugePedia]
snp3D : Map Gene to Disease54058
BioCentury BCIQC21orf58
ClinGenC21orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54058
Chemical/Pharm GKB GenePA25853
Clinical trialC21orf58
Miscellaneous
canSAR (ICR)C21orf58 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf58
EVEXC21orf58
GoPubMedC21orf58
iHOPC21orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:09 CET 2017

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