Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C21orf59 (chromosome 21 open reading frame 59)

Identity

Alias_namesC21orf48
chromosome 21 open reading frame 48
Alias_symbol (synonym)FLJ20467
FBB18
CILD26
Kur
Other alias
HGNC (Hugo) C21orf59
LocusID (NCBI) 56683
Atlas_Id 61127
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32601669 and ends at 32612871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf59   1301
Cards
Entrez_Gene (NCBI)C21orf59  56683  chromosome 21 open reading frame 59
AliasesC21orf48; CILD26; FBB18; Kur
GeneCards (Weizmann)C21orf59
Ensembl hg19 (Hinxton)ENSG00000159079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159079 [Gene_View]  chr21:32601669-32612871 [Contig_View]  C21orf59 [Vega]
ICGC DataPortalENSG00000159079
TCGA cBioPortalC21orf59
AceView (NCBI)C21orf59
Genatlas (Paris)C21orf59
WikiGenes56683
SOURCE (Princeton)C21orf59
Genetics Home Reference (NIH)C21orf59
Genomic and cartography
GoldenPath hg38 (UCSC)C21orf59  -     chr21:32601669-32612871 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C21orf59  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblC21orf59 - 21q22.11 [CytoView hg19]  C21orf59 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIC21orf59 [Mapview hg19]  C21orf59 [Mapview hg38]
OMIM615494   615500   
Gene and transcription
Genbank (Entrez)AF282851 AK000474 AK055328 AK094456 AK097566
RefSeq transcript (Entrez)NM_001350334 NM_001350335 NM_001350336 NM_001350337 NM_017835 NM_021254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C21orf59
Cluster EST : UnigeneHs.5811 [ NCBI ]
CGAP (NCI)Hs.5811
Alternative Splicing GalleryENSG00000159079
Gene ExpressionC21orf59 [ NCBI-GEO ]   C21orf59 [ EBI - ARRAY_EXPRESS ]   C21orf59 [ SEEK ]   C21orf59 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf59 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56683
GTEX Portal (Tissue expression)C21orf59
Human Protein AtlasENSG00000159079-C21orf59 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57076   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57076  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57076
Splice isoforms : SwissVarP57076
PhosPhoSitePlusP57076
Domains : Interpro (EBI)DUF2870   
Domain families : Pfam (Sanger)DUF2870 (PF11069)   
Domain families : Pfam (NCBI)pfam11069   
Conserved Domain (NCBI)C21orf59
DMDM Disease mutations56683
Blocks (Seattle)C21orf59
SuperfamilyP57076
Human Protein Atlas [tissue]ENSG00000159079-C21orf59 [tissue]
Peptide AtlasP57076
HPRD10756
IPIIPI00025710   IPI01009719   IPI01022500   IPI00289348   IPI00658069   IPI00658020   IPI00793717   IPI00795528   IPI00016411   IPI00926044   IPI00926259   
Protein Interaction databases
DIP (DOE-UCLA)P57076
IntAct (EBI)P57076
FunCoupENSG00000159079
BioGRIDC21orf59
STRING (EMBL)C21orf59
ZODIACC21orf59
Ontologies - Pathways
QuickGOP57076
Ontology : AmiGOnucleus  cytosol  cell projection morphogenesis  
Ontology : EGO-EBInucleus  cytosol  cell projection morphogenesis  
NDEx NetworkC21orf59
Atlas of Cancer Signalling NetworkC21orf59
Wikipedia pathwaysC21orf59
Orthology - Evolution
OrthoDB56683
GeneTree (enSembl)ENSG00000159079
Phylogenetic Trees/Animal Genes : TreeFamC21orf59
HOVERGENP57076
HOGENOMP57076
Homologs : HomoloGeneC21orf59
Homology/Alignments : Family Browser (UCSC)C21orf59
Gene fusions - Rearrangements
Fusion: Tumor Portal C21orf59
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf59
dbVarC21orf59
ClinVarC21orf59
1000_GenomesC21orf59 
Exome Variant ServerC21orf59
ExAC (Exome Aggregation Consortium)ENSG00000159079
GNOMAD BrowserENSG00000159079
Genetic variants : HAPMAP56683
Genomic Variants (DGV)C21orf59 [DGVbeta]
DECIPHERC21orf59 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC21orf59 
Mutations
ICGC Data PortalC21orf59 
TCGA Data PortalC21orf59 
Broad Tumor PortalC21orf59
OASIS PortalC21orf59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC21orf59  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC21orf59
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C21orf59
DgiDB (Drug Gene Interaction Database)C21orf59
DoCM (Curated mutations)C21orf59 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf59 (select a term)
intoGenC21orf59
Cancer3DC21orf59(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615494    615500   
Orphanet
MedgenC21orf59
Genetic Testing Registry C21orf59
NextProtP57076 [Medical]
TSGene56683
GENETestsC21orf59
Target ValidationC21orf59
Huge Navigator C21orf59 [HugePedia]
snp3D : Map Gene to Disease56683
BioCentury BCIQC21orf59
ClinGenC21orf59
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56683
Chemical/Pharm GKB GenePA25854
Clinical trialC21orf59
Miscellaneous
canSAR (ICR)C21orf59 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf59
EVEXC21orf59
GoPubMedC21orf59
iHOPC21orf59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:21 CET 2017

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