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C21orf62-AS1 (C21orf62 antisense RNA 1)

Identity

Alias_namesC21orf49
chromosome 21 open reading frame 49
Other alias
HGNC (Hugo) C21orf62-AS1
LocusID (NCBI) 54067
Atlas_Id 61129
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 34144411 and ends at 34171275 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AKAP9 (7q21.2) / C21orf62-AS1 (21q22.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf62-AS1   1290
Cards
Entrez_Gene (NCBI)C21orf62-AS1  54067  C21orf62 antisense RNA 1
AliasesC21orf49
GeneCards (Weizmann)C21orf62-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr21:34144411-34171275 [Contig_View]  C21orf62-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:34144411-34171275 [Contig_View]  C21orf62-AS1 [Vega]
TCGA cBioPortalC21orf62-AS1
AceView (NCBI)C21orf62-AS1
Genatlas (Paris)C21orf62-AS1
WikiGenes54067
SOURCE (Princeton)C21orf62-AS1
Genetics Home Reference (NIH)C21orf62-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)C21orf62-AS1  -     chr21:34144411-34171275 +  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C21orf62-AS1  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblC21orf62-AS1 - 21q22.11 [CytoView hg19]  C21orf62-AS1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIC21orf62-AS1 [Mapview hg19]  C21orf62-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096601 BC034794 BC117397 BC117399 DA321673
RefSeq transcript (Entrez)NM_001006116
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_003315969 NW_004929426
Consensus coding sequences : CCDS (NCBI)C21orf62-AS1
Cluster EST : UnigeneHs.54725 [ NCBI ]
CGAP (NCI)Hs.54725
Gene ExpressionC21orf62-AS1 [ NCBI-GEO ]   C21orf62-AS1 [ EBI - ARRAY_EXPRESS ]   C21orf62-AS1 [ SEEK ]   C21orf62-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf62-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54067
GTEX Portal (Tissue expression)C21orf62-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RA5
Splice isoforms : SwissVarQ17RA5
PhosPhoSitePlusQ17RA5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C21orf62-AS1
DMDM Disease mutations54067
Blocks (Seattle)C21orf62-AS1
SuperfamilyQ17RA5
Peptide AtlasQ17RA5
HPRD10750
IPIIPI00478580   IPI00658146   IPI00892601   IPI00892721   
Protein Interaction databases
DIP (DOE-UCLA)Q17RA5
IntAct (EBI)Q17RA5
BioGRIDC21orf62-AS1
STRING (EMBL)C21orf62-AS1
ZODIACC21orf62-AS1
Ontologies - Pathways
QuickGOQ17RA5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC21orf62-AS1
Atlas of Cancer Signalling NetworkC21orf62-AS1
Wikipedia pathwaysC21orf62-AS1
Orthology - Evolution
OrthoDB54067
Phylogenetic Trees/Animal Genes : TreeFamC21orf62-AS1
HOVERGENQ17RA5
HOGENOMQ17RA5
Homologs : HomoloGeneC21orf62-AS1
Homology/Alignments : Family Browser (UCSC)C21orf62-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf62-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf62-AS1
dbVarC21orf62-AS1
ClinVarC21orf62-AS1
1000_GenomesC21orf62-AS1 
Exome Variant ServerC21orf62-AS1
ExAC (Exome Aggregation Consortium)C21orf62-AS1 (select the gene name)
Genetic variants : HAPMAP54067
Genomic Variants (DGV)C21orf62-AS1 [DGVbeta]
DECIPHER (Syndromes)21:34144411-34171275  
CONAN: Copy Number AnalysisC21orf62-AS1 
Mutations
ICGC Data PortalC21orf62-AS1 
TCGA Data PortalC21orf62-AS1 
Broad Tumor PortalC21orf62-AS1
OASIS PortalC21orf62-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC21orf62-AS1
BioMutasearch C21orf62-AS1
DgiDB (Drug Gene Interaction Database)C21orf62-AS1
DoCM (Curated mutations)C21orf62-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf62-AS1 (select a term)
intoGenC21orf62-AS1
Cancer3DC21orf62-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC21orf62-AS1
Genetic Testing Registry C21orf62-AS1
NextProtQ17RA5 [Medical]
TSGene54067
GENETestsC21orf62-AS1
Huge Navigator C21orf62-AS1 [HugePedia]
snp3D : Map Gene to Disease54067
BioCentury BCIQC21orf62-AS1
ClinGenC21orf62-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54067
Chemical/Pharm GKB GenePA25844
Clinical trialC21orf62-AS1
Miscellaneous
canSAR (ICR)C21orf62-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf62-AS1
EVEXC21orf62-AS1
GoPubMedC21orf62-AS1
iHOPC21orf62-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:10 CET 2017

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