Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C21orf62 (chromosome 21 open reading frame 62)

Identity

Alias_namesC21orf120
chromosome 21 open reading frame 120
Alias_symbol (synonym)B37
PRED81
Other alias
HGNC (Hugo) C21orf62
LocusID (NCBI) 56245
Atlas_Id 61128
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32790673 and ends at 32813743 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYNJ1 (21q22.11) / C21orf62 (21q22.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf62   1305
Cards
Entrez_Gene (NCBI)C21orf62  56245  chromosome 21 open reading frame 62
AliasesB37; C21orf120; PRED81
GeneCards (Weizmann)C21orf62
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:32790673-32813743 [Contig_View]  C21orf62 [Vega]
TCGA cBioPortalC21orf62
AceView (NCBI)C21orf62
Genatlas (Paris)C21orf62
WikiGenes56245
SOURCE (Princeton)C21orf62
Genetics Home Reference (NIH)C21orf62
Genomic and cartography
GoldenPath hg38 (UCSC)C21orf62  -     chr21:32790673-32813743 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C21orf62  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblC21orf62 - 21q22.11 [CytoView hg19]  C21orf62 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIC21orf62 [Mapview hg19]  C21orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF231922 AI651610 AK290983 BC004959 BC069689
RefSeq transcript (Entrez)NM_001162495 NM_001162496 NM_019596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C21orf62
Cluster EST : UnigeneHs.517235 [ NCBI ]
CGAP (NCI)Hs.517235
Gene ExpressionC21orf62 [ NCBI-GEO ]   C21orf62 [ EBI - ARRAY_EXPRESS ]   C21orf62 [ SEEK ]   C21orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56245
GTEX Portal (Tissue expression)C21orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYP8
Splice isoforms : SwissVarQ9NYP8
PhosPhoSitePlusQ9NYP8
Domains : Interpro (EBI)DUF4571   
Domain families : Pfam (Sanger)DUF4571 (PF15137)   
Domain families : Pfam (NCBI)pfam15137   
Conserved Domain (NCBI)C21orf62
DMDM Disease mutations56245
Blocks (Seattle)C21orf62
SuperfamilyQ9NYP8
Peptide AtlasQ9NYP8
HPRD10759
IPIIPI00657675   IPI00657707   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYP8
IntAct (EBI)Q9NYP8
BioGRIDC21orf62
STRING (EMBL)C21orf62
ZODIACC21orf62
Ontologies - Pathways
QuickGOQ9NYP8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC21orf62
Atlas of Cancer Signalling NetworkC21orf62
Wikipedia pathwaysC21orf62
Orthology - Evolution
OrthoDB56245
Phylogenetic Trees/Animal Genes : TreeFamC21orf62
HOVERGENQ9NYP8
HOGENOMQ9NYP8
Homologs : HomoloGeneC21orf62
Homology/Alignments : Family Browser (UCSC)C21orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf62
dbVarC21orf62
ClinVarC21orf62
1000_GenomesC21orf62 
Exome Variant ServerC21orf62
ExAC (Exome Aggregation Consortium)C21orf62 (select the gene name)
Genetic variants : HAPMAP56245
Genomic Variants (DGV)C21orf62 [DGVbeta]
DECIPHERC21orf62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC21orf62 
Mutations
ICGC Data PortalC21orf62 
TCGA Data PortalC21orf62 
Broad Tumor PortalC21orf62
OASIS PortalC21orf62 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC21orf62
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch C21orf62
DgiDB (Drug Gene Interaction Database)C21orf62
DoCM (Curated mutations)C21orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf62 (select a term)
intoGenC21orf62
Cancer3DC21orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC21orf62
Genetic Testing Registry C21orf62
NextProtQ9NYP8 [Medical]
TSGene56245
GENETestsC21orf62
Target ValidationC21orf62
Huge Navigator C21orf62 [HugePedia]
snp3D : Map Gene to Disease56245
BioCentury BCIQC21orf62
ClinGenC21orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56245
Chemical/Pharm GKB GenePA25857
Clinical trialC21orf62
Miscellaneous
canSAR (ICR)C21orf62 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf62
EVEXC21orf62
GoPubMedC21orf62
iHOPC21orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:03 CEST 2017

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