Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C21orf91 (chromosome 21 open reading frame 91)

Identity

Alias_namesC21orf38
C21orf14
chromosome 21 open reading frame 38
Alias_symbol (synonym)YG81
EURL
CSSG1
Other alias
HGNC (Hugo) C21orf91
LocusID (NCBI) 54149
Atlas_Id 61130
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 17788967 and ends at 17819386 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C21orf91   16459
Cards
Entrez_Gene (NCBI)C21orf91  54149  chromosome 21 open reading frame 91
AliasesC21orf14; C21orf38; CSSG1; EURL; 
YG81
GeneCards (Weizmann)C21orf91
Ensembl hg19 (Hinxton)ENSG00000154642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154642 [Gene_View]  chr21:17788967-17819386 [Contig_View]  C21orf91 [Vega]
ICGC DataPortalENSG00000154642
TCGA cBioPortalC21orf91
AceView (NCBI)C21orf91
Genatlas (Paris)C21orf91
WikiGenes54149
SOURCE (Princeton)C21orf91
Genetics Home Reference (NIH)C21orf91
Genomic and cartography
GoldenPath hg38 (UCSC)C21orf91  -     chr21:17788967-17819386 -  21q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C21orf91  -     21q21.1   [Description]    (hg19-Feb_2009)
EnsemblC21orf91 - 21q21.1 [CytoView hg19]  C21orf91 - 21q21.1 [CytoView hg38]
Mapping of homologs : NCBIC21orf91 [Mapview hg19]  C21orf91 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF239726 AJ227876 AK023825 AK225123 AK314471
RefSeq transcript (Entrez)NM_001100420 NM_001100421 NM_017447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C21orf91
Cluster EST : UnigeneHs.293811 [ NCBI ]
CGAP (NCI)Hs.293811
Alternative Splicing GalleryENSG00000154642
Gene ExpressionC21orf91 [ NCBI-GEO ]   C21orf91 [ EBI - ARRAY_EXPRESS ]   C21orf91 [ SEEK ]   C21orf91 [ MEM ]
Gene Expression Viewer (FireBrowse)C21orf91 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54149
GTEX Portal (Tissue expression)C21orf91
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYK6
Splice isoforms : SwissVarQ9NYK6
PhosPhoSitePlusQ9NYK6
Domains : Interpro (EBI)EURL_prot   
Domain families : Pfam (Sanger)EURL (PF06937)   
Domain families : Pfam (NCBI)pfam06937   
Conserved Domain (NCBI)C21orf91
DMDM Disease mutations54149
Blocks (Seattle)C21orf91
SuperfamilyQ9NYK6
Human Protein AtlasENSG00000154642
Peptide AtlasQ9NYK6
HPRD10776
IPIIPI00010164   IPI00792093   IPI00792323   IPI00793414   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYK6
IntAct (EBI)Q9NYK6
FunCoupENSG00000154642
BioGRIDC21orf91
STRING (EMBL)C21orf91
ZODIACC21orf91
Ontologies - Pathways
QuickGOQ9NYK6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC21orf91
Atlas of Cancer Signalling NetworkC21orf91
Wikipedia pathwaysC21orf91
Orthology - Evolution
OrthoDB54149
GeneTree (enSembl)ENSG00000154642
Phylogenetic Trees/Animal Genes : TreeFamC21orf91
HOVERGENQ9NYK6
HOGENOMQ9NYK6
Homologs : HomoloGeneC21orf91
Homology/Alignments : Family Browser (UCSC)C21orf91
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC21orf91 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C21orf91
dbVarC21orf91
ClinVarC21orf91
1000_GenomesC21orf91 
Exome Variant ServerC21orf91
ExAC (Exome Aggregation Consortium)C21orf91 (select the gene name)
Genetic variants : HAPMAP54149
Genomic Variants (DGV)C21orf91 [DGVbeta]
DECIPHERC21orf91 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC21orf91 
Mutations
ICGC Data PortalC21orf91 
TCGA Data PortalC21orf91 
Broad Tumor PortalC21orf91
OASIS PortalC21orf91 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC21orf91  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC21orf91
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C21orf91
DgiDB (Drug Gene Interaction Database)C21orf91
DoCM (Curated mutations)C21orf91 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C21orf91 (select a term)
intoGenC21orf91
Cancer3DC21orf91(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC21orf91
Genetic Testing Registry C21orf91
NextProtQ9NYK6 [Medical]
TSGene54149
GENETestsC21orf91
Target ValidationC21orf91
Huge Navigator C21orf91 [HugePedia]
snp3D : Map Gene to Disease54149
BioCentury BCIQC21orf91
ClinGenC21orf91
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54149
Chemical/Pharm GKB GenePA25879
Clinical trialC21orf91
Miscellaneous
canSAR (ICR)C21orf91 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC21orf91
EVEXC21orf91
GoPubMedC21orf91
iHOPC21orf91
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:04 CEST 2017

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