Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C22orf15 (chromosome 22 open reading frame 15)

Identity

Alias_symbol (synonym)FLJ36561
N27C7-3
Other alias
HGNC (Hugo) C22orf15
LocusID (NCBI) 150248
Atlas_Id 61132
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23763014 and ends at 23765863 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf15   15558
Cards
Entrez_Gene (NCBI)C22orf15  150248  chromosome 22 open reading frame 15
AliasesN27C7-3
GeneCards (Weizmann)C22orf15
Ensembl hg19 (Hinxton)ENSG00000169314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169314 [Gene_View]  chr22:23763014-23765863 [Contig_View]  C22orf15 [Vega]
ICGC DataPortalENSG00000169314
TCGA cBioPortalC22orf15
AceView (NCBI)C22orf15
Genatlas (Paris)C22orf15
WikiGenes150248
SOURCE (Princeton)C22orf15
Genetics Home Reference (NIH)C22orf15
Genomic and cartography
GoldenPath hg38 (UCSC)C22orf15  -     chr22:23763014-23765863 +  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C22orf15  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblC22orf15 - 22q11.23 [CytoView hg19]  C22orf15 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIC22orf15 [Mapview hg19]  C22orf15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093880 BC113450 BC113452 BU584544 BU739625
RefSeq transcript (Entrez)NM_001331041 NM_182520
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187633
Consensus coding sequences : CCDS (NCBI)C22orf15
Cluster EST : UnigeneHs.116254 [ NCBI ]
CGAP (NCI)Hs.116254
Alternative Splicing GalleryENSG00000169314
Gene ExpressionC22orf15 [ NCBI-GEO ]   C22orf15 [ EBI - ARRAY_EXPRESS ]   C22orf15 [ SEEK ]   C22orf15 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150248
GTEX Portal (Tissue expression)C22orf15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYQ4
Splice isoforms : SwissVarQ8WYQ4
PhosPhoSitePlusQ8WYQ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C22orf15
DMDM Disease mutations150248
Blocks (Seattle)C22orf15
SuperfamilyQ8WYQ4
Human Protein AtlasENSG00000169314
Peptide AtlasQ8WYQ4
HPRD08778
IPIIPI00103766   IPI00607803   IPI00783735   IPI00879986   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYQ4
IntAct (EBI)Q8WYQ4
FunCoupENSG00000169314
BioGRIDC22orf15
STRING (EMBL)C22orf15
ZODIACC22orf15
Ontologies - Pathways
QuickGOQ8WYQ4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC22orf15
Atlas of Cancer Signalling NetworkC22orf15
Wikipedia pathwaysC22orf15
Orthology - Evolution
OrthoDB150248
GeneTree (enSembl)ENSG00000169314
Phylogenetic Trees/Animal Genes : TreeFamC22orf15
HOVERGENQ8WYQ4
HOGENOMQ8WYQ4
Homologs : HomoloGeneC22orf15
Homology/Alignments : Family Browser (UCSC)C22orf15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf15
dbVarC22orf15
ClinVarC22orf15
1000_GenomesC22orf15 
Exome Variant ServerC22orf15
ExAC (Exome Aggregation Consortium)C22orf15 (select the gene name)
Genetic variants : HAPMAP150248
Genomic Variants (DGV)C22orf15 [DGVbeta]
DECIPHERC22orf15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC22orf15 
Mutations
ICGC Data PortalC22orf15 
TCGA Data PortalC22orf15 
Broad Tumor PortalC22orf15
OASIS PortalC22orf15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf15
DgiDB (Drug Gene Interaction Database)C22orf15
DoCM (Curated mutations)C22orf15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf15 (select a term)
intoGenC22orf15
Cancer3DC22orf15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC22orf15
Genetic Testing Registry C22orf15
NextProtQ8WYQ4 [Medical]
TSGene150248
GENETestsC22orf15
Target ValidationC22orf15
Huge Navigator C22orf15 [HugePedia]
snp3D : Map Gene to Disease150248
BioCentury BCIQC22orf15
ClinGenC22orf15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150248
Chemical/Pharm GKB GenePA134933953
Clinical trialC22orf15
Miscellaneous
canSAR (ICR)C22orf15 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf15
EVEXC22orf15
GoPubMedC22orf15
iHOPC22orf15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:04 CEST 2017

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