Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C22orf24 (chromosome 22 open reading frame 24)

Identity

Alias_symbol (synonym)HSN44A4A
Other alias
HGNC (Hugo) C22orf24
LocusID (NCBI) 25775
Atlas_Id 61134
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32329507 and ends at 32334440 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C22orf24 (22q12.3) / GLIPR2 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf24   23051
Cards
Entrez_Gene (NCBI)C22orf24  25775  chromosome 22 open reading frame 24
AliasesHSN44A4A
GeneCards (Weizmann)C22orf24
Ensembl hg19 (Hinxton) [Gene_View]  chr22:32329507-32334440 [Contig_View]  C22orf24 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:32329507-32334440 [Contig_View]  C22orf24 [Vega]
TCGA cBioPortalC22orf24
AceView (NCBI)C22orf24
Genatlas (Paris)C22orf24
WikiGenes25775
SOURCE (Princeton)C22orf24
Genetics Home Reference (NIH)C22orf24
Genomic and cartography
GoldenPath hg19 (UCSC)C22orf24  -     chr22:32329507-32334440 -  22q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C22orf24  -     22q12.3   [Description]    (hg38-Dec_2013)
EnsemblC22orf24 - 22q12.3 [CytoView hg19]  C22orf24 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIC22orf24 [Mapview hg19]  C22orf24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ704765 AJ704766 AK294232 AK315264 AL050256
RefSeq transcript (Entrez)NM_001302819 NM_001302820 NM_015372
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)C22orf24
Cluster EST : UnigeneHs.627602 [ NCBI ]
CGAP (NCI)Hs.627602
Gene ExpressionC22orf24 [ NCBI-GEO ]   C22orf24 [ EBI - ARRAY_EXPRESS ]   C22orf24 [ SEEK ]   C22orf24 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25775
GTEX Portal (Tissue expression)C22orf24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y442   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y442  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y442
Splice isoforms : SwissVarQ9Y442
PhosPhoSitePlusQ9Y442
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C22orf24
DMDM Disease mutations25775
Blocks (Seattle)C22orf24
SuperfamilyQ9Y442
Peptide AtlasQ9Y442
IPIIPI01009161   IPI00552120   IPI00022268   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y442
IntAct (EBI)Q9Y442
BioGRIDC22orf24
STRING (EMBL)C22orf24
ZODIACC22orf24
Ontologies - Pathways
QuickGOQ9Y442
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC22orf24
Atlas of Cancer Signalling NetworkC22orf24
Wikipedia pathwaysC22orf24
Orthology - Evolution
OrthoDB25775
Phylogenetic Trees/Animal Genes : TreeFamC22orf24
HOVERGENQ9Y442
HOGENOMQ9Y442
Homologs : HomoloGeneC22orf24
Homology/Alignments : Family Browser (UCSC)C22orf24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf24
dbVarC22orf24
ClinVarC22orf24
1000_GenomesC22orf24 
Exome Variant ServerC22orf24
ExAC (Exome Aggregation Consortium)C22orf24 (select the gene name)
Genetic variants : HAPMAP25775
Genomic Variants (DGV)C22orf24 [DGVbeta]
DECIPHER (Syndromes)22:32329507-32334440  
CONAN: Copy Number AnalysisC22orf24 
Mutations
ICGC Data PortalC22orf24 
TCGA Data PortalC22orf24 
Broad Tumor PortalC22orf24
OASIS PortalC22orf24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf24
DgiDB (Drug Gene Interaction Database)C22orf24
DoCM (Curated mutations)C22orf24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf24 (select a term)
intoGenC22orf24
Cancer3DC22orf24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC22orf24
Genetic Testing Registry C22orf24
NextProtQ9Y442 [Medical]
TSGene25775
GENETestsC22orf24
Huge Navigator C22orf24 [HugePedia]
snp3D : Map Gene to Disease25775
BioCentury BCIQC22orf24
ClinGenC22orf24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25775
Chemical/Pharm GKB GenePA134944653
Clinical trialC22orf24
Miscellaneous
canSAR (ICR)C22orf24 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf24
EVEXC22orf24
GoPubMedC22orf24
iHOPC22orf24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:11 CET 2017

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