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C22orf29 (chromosome 22 open reading frame 29)

Identity

Alias_symbol (synonym)FLJ21125
BOP
Other alias
HGNC (Hugo) C22orf29
LocusID (NCBI) 79680
Atlas_Id 55169
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19833661 and ends at 19842371 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf29   26112
Cards
Entrez_Gene (NCBI)C22orf29  79680  chromosome 22 open reading frame 29
AliasesBOP
GeneCards (Weizmann)C22orf29
Ensembl hg19 (Hinxton)ENSG00000215012 [Gene_View]  chr22:19833661-19842371 [Contig_View]  C22orf29 [Vega]
Ensembl hg38 (Hinxton)ENSG00000215012 [Gene_View]  chr22:19833661-19842371 [Contig_View]  C22orf29 [Vega]
ICGC DataPortalENSG00000215012
TCGA cBioPortalC22orf29
AceView (NCBI)C22orf29
Genatlas (Paris)C22orf29
WikiGenes79680
SOURCE (Princeton)C22orf29
Genetics Home Reference (NIH)C22orf29
Genomic and cartography
GoldenPath hg19 (UCSC)C22orf29  -     chr22:19833661-19842371 -  22q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C22orf29  -     22q11.21   [Description]    (hg38-Dec_2013)
EnsemblC22orf29 - 22q11.21 [CytoView hg19]  C22orf29 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIC22orf29 [Mapview hg19]  C22orf29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024778 AK026924 AK225088 AK291262 AL832509
RefSeq transcript (Entrez)NM_024627
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929429
Consensus coding sequences : CCDS (NCBI)C22orf29
Cluster EST : UnigeneHs.105642 [ NCBI ]
CGAP (NCI)Hs.105642
Alternative Splicing GalleryENSG00000215012
Gene ExpressionC22orf29 [ NCBI-GEO ]   C22orf29 [ EBI - ARRAY_EXPRESS ]   C22orf29 [ SEEK ]   C22orf29 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79680
GTEX Portal (Tissue expression)C22orf29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L3V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L3V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L3V2
Splice isoforms : SwissVarQ7L3V2
PhosPhoSitePlusQ7L3V2
Domains : Interpro (EBI)Bop    DUF4939    LDOC1-rel   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)C22orf29
DMDM Disease mutations79680
Blocks (Seattle)C22orf29
SuperfamilyQ7L3V2
Human Protein AtlasENSG00000215012
Peptide AtlasQ7L3V2
HPRD13382
IPIIPI00472049   IPI00878559   
Protein Interaction databases
DIP (DOE-UCLA)Q7L3V2
IntAct (EBI)Q7L3V2
FunCoupENSG00000215012
BioGRIDC22orf29
STRING (EMBL)C22orf29
ZODIACC22orf29
Ontologies - Pathways
QuickGOQ7L3V2
Ontology : AmiGOprotein binding  mitochondrion  regulation of mitochondrial membrane potential  mitochondrial outer membrane permeabilization  
Ontology : EGO-EBIprotein binding  mitochondrion  regulation of mitochondrial membrane potential  mitochondrial outer membrane permeabilization  
NDEx NetworkC22orf29
Atlas of Cancer Signalling NetworkC22orf29
Wikipedia pathwaysC22orf29
Orthology - Evolution
OrthoDB79680
GeneTree (enSembl)ENSG00000215012
Phylogenetic Trees/Animal Genes : TreeFamC22orf29
HOVERGENQ7L3V2
HOGENOMQ7L3V2
Homologs : HomoloGeneC22orf29
Homology/Alignments : Family Browser (UCSC)C22orf29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf29
dbVarC22orf29
ClinVarC22orf29
1000_GenomesC22orf29 
Exome Variant ServerC22orf29
ExAC (Exome Aggregation Consortium)C22orf29 (select the gene name)
Genetic variants : HAPMAP79680
Genomic Variants (DGV)C22orf29 [DGVbeta]
DECIPHER (Syndromes)22:19833661-19842371  ENSG00000215012
CONAN: Copy Number AnalysisC22orf29 
Mutations
ICGC Data PortalC22orf29 
TCGA Data PortalC22orf29 
Broad Tumor PortalC22orf29
OASIS PortalC22orf29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf29
DgiDB (Drug Gene Interaction Database)C22orf29
DoCM (Curated mutations)C22orf29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf29 (select a term)
intoGenC22orf29
Cancer3DC22orf29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC22orf29
Genetic Testing Registry C22orf29
NextProtQ7L3V2 [Medical]
TSGene79680
GENETestsC22orf29
Huge Navigator C22orf29 [HugePedia]
snp3D : Map Gene to Disease79680
BioCentury BCIQC22orf29
ClinGenC22orf29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79680
Chemical/Pharm GKB GenePA145149415
Clinical trialC22orf29
Miscellaneous
canSAR (ICR)C22orf29 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf29
EVEXC22orf29
GoPubMedC22orf29
iHOPC22orf29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:11 CET 2017

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