Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C22orf31 (chromosome 22 open reading frame 31)

Identity

Alias_symbol (synonym)HS747E2A
bK747E2.1
Other alias
HGNC (Hugo) C22orf31
LocusID (NCBI) 25770
Atlas_Id 61136
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 29058672 and ends at 29061919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf31   26931
Cards
Entrez_Gene (NCBI)C22orf31  25770  chromosome 22 open reading frame 31
AliasesHS747E2A; bK747E2.1
GeneCards (Weizmann)C22orf31
Ensembl hg19 (Hinxton)ENSG00000100249 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100249 [Gene_View]  chr22:29058672-29061919 [Contig_View]  C22orf31 [Vega]
ICGC DataPortalENSG00000100249
TCGA cBioPortalC22orf31
AceView (NCBI)C22orf31
Genatlas (Paris)C22orf31
WikiGenes25770
SOURCE (Princeton)C22orf31
Genetics Home Reference (NIH)C22orf31
Genomic and cartography
GoldenPath hg38 (UCSC)C22orf31  -     chr22:29058672-29061919 -  22q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C22orf31  -     22q12.1   [Description]    (hg19-Feb_2009)
EnsemblC22orf31 - 22q12.1 [CytoView hg19]  C22orf31 - 22q12.1 [CytoView hg38]
Mapping of homologs : NCBIC22orf31 [Mapview hg19]  C22orf31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL035364 BC074758 BC126262 BC126264 CR456405
RefSeq transcript (Entrez)NM_015370
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C22orf31
Cluster EST : UnigeneHs.50891 [ NCBI ]
CGAP (NCI)Hs.50891
Alternative Splicing GalleryENSG00000100249
Gene ExpressionC22orf31 [ NCBI-GEO ]   C22orf31 [ EBI - ARRAY_EXPRESS ]   C22orf31 [ SEEK ]   C22orf31 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25770
GTEX Portal (Tissue expression)C22orf31
Human Protein AtlasENSG00000100249-C22orf31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95567
Splice isoforms : SwissVarO95567
PhosPhoSitePlusO95567
Domains : Interpro (EBI)DUF4662   
Domain families : Pfam (Sanger)DUF4662 (PF15578)   
Domain families : Pfam (NCBI)pfam15578   
Conserved Domain (NCBI)C22orf31
DMDM Disease mutations25770
Blocks (Seattle)C22orf31
SuperfamilyO95567
Human Protein Atlas [tissue]ENSG00000100249-C22orf31 [tissue]
Peptide AtlasO95567
HPRD11031
IPIIPI00294974   
Protein Interaction databases
DIP (DOE-UCLA)O95567
IntAct (EBI)O95567
FunCoupENSG00000100249
BioGRIDC22orf31
STRING (EMBL)C22orf31
ZODIACC22orf31
Ontologies - Pathways
QuickGOO95567
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC22orf31
Atlas of Cancer Signalling NetworkC22orf31
Wikipedia pathwaysC22orf31
Orthology - Evolution
OrthoDB25770
GeneTree (enSembl)ENSG00000100249
Phylogenetic Trees/Animal Genes : TreeFamC22orf31
HOVERGENO95567
HOGENOMO95567
Homologs : HomoloGeneC22orf31
Homology/Alignments : Family Browser (UCSC)C22orf31
Gene fusions - Rearrangements
Tumor Fusion PortalC22orf31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf31
dbVarC22orf31
ClinVarC22orf31
1000_GenomesC22orf31 
Exome Variant ServerC22orf31
ExAC (Exome Aggregation Consortium)ENSG00000100249
GNOMAD BrowserENSG00000100249
Genetic variants : HAPMAP25770
Genomic Variants (DGV)C22orf31 [DGVbeta]
DECIPHERC22orf31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC22orf31 
Mutations
ICGC Data PortalC22orf31 
TCGA Data PortalC22orf31 
Broad Tumor PortalC22orf31
OASIS PortalC22orf31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf31
DgiDB (Drug Gene Interaction Database)C22orf31
DoCM (Curated mutations)C22orf31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf31 (select a term)
intoGenC22orf31
Cancer3DC22orf31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC22orf31
MedgenC22orf31
Genetic Testing Registry C22orf31
NextProtO95567 [Medical]
TSGene25770
GENETestsC22orf31
Target ValidationC22orf31
Huge Navigator C22orf31 [HugePedia]
snp3D : Map Gene to Disease25770
BioCentury BCIQC22orf31
ClinGenC22orf31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25770
Chemical/Pharm GKB GenePA145149441
Clinical trialC22orf31
Miscellaneous
canSAR (ICR)C22orf31 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf31
EVEXC22orf31
GoPubMedC22orf31
iHOPC22orf31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:28 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.