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C22orf34 (chromosome 22 open reading frame 34)

Identity

Other alias-
HGNC (Hugo) C22orf34
LocusID (NCBI) 348645
Atlas_Id 61137
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 49620456 and ends at 49657542 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C22orf34 (22q13.33) / BRD1 (22q13.33)C22orf34 (22q13.33) / ZBED4 (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf34   28010
Cards
Entrez_Gene (NCBI)C22orf34  348645  chromosome 22 open reading frame 34
Aliases
GeneCards (Weizmann)C22orf34
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:49620456-49657542 [Contig_View]  C22orf34 [Vega]
TCGA cBioPortalC22orf34
AceView (NCBI)C22orf34
Genatlas (Paris)C22orf34
WikiGenes348645
SOURCE (Princeton)C22orf34
Genetics Home Reference (NIH)C22orf34
Genomic and cartography
GoldenPath hg38 (UCSC)C22orf34  -     chr22:49620456-49657542 -  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C22orf34  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblC22orf34 - 22q13.33 [CytoView hg19]  C22orf34 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBIC22orf34 [Mapview hg19]  C22orf34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124962 AK126430 AK128192 BC033837 BC048207
RefSeq transcript (Entrez)NM_001039473 NM_001289922 NM_198851
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C22orf34
Cluster EST : UnigeneHs.585281 [ NCBI ]
CGAP (NCI)Hs.585281
Gene ExpressionC22orf34 [ NCBI-GEO ]   C22orf34 [ EBI - ARRAY_EXPRESS ]   C22orf34 [ SEEK ]   C22orf34 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348645
GTEX Portal (Tissue expression)C22orf34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV56
Splice isoforms : SwissVarQ6ZV56
PhosPhoSitePlusQ6ZV56
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C22orf34
DMDM Disease mutations348645
Blocks (Seattle)C22orf34
SuperfamilyQ6ZV56
Peptide AtlasQ6ZV56
HPRD14180
IPIIPI00744248   IPI00445897   IPI00394842   IPI00854655   IPI00856102   IPI00878454   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV56
IntAct (EBI)Q6ZV56
BioGRIDC22orf34
STRING (EMBL)C22orf34
ZODIACC22orf34
Ontologies - Pathways
QuickGOQ6ZV56
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC22orf34
Atlas of Cancer Signalling NetworkC22orf34
Wikipedia pathwaysC22orf34
Orthology - Evolution
OrthoDB348645
Phylogenetic Trees/Animal Genes : TreeFamC22orf34
HOVERGENQ6ZV56
HOGENOMQ6ZV56
Homologs : HomoloGeneC22orf34
Homology/Alignments : Family Browser (UCSC)C22orf34
Gene fusions - Rearrangements
Tumor Fusion PortalC22orf34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf34
dbVarC22orf34
ClinVarC22orf34
1000_GenomesC22orf34 
Exome Variant ServerC22orf34
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP348645
Genomic Variants (DGV)C22orf34 [DGVbeta]
DECIPHERC22orf34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC22orf34 
Mutations
ICGC Data PortalC22orf34 
TCGA Data PortalC22orf34 
Broad Tumor PortalC22orf34
OASIS PortalC22orf34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf34
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch C22orf34
DgiDB (Drug Gene Interaction Database)C22orf34
DoCM (Curated mutations)C22orf34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf34 (select a term)
intoGenC22orf34
Cancer3DC22orf34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC22orf34
MedgenC22orf34
Genetic Testing Registry C22orf34
NextProtQ6ZV56 [Medical]
TSGene348645
GENETestsC22orf34
Target ValidationC22orf34
Huge Navigator C22orf34 [HugePedia]
snp3D : Map Gene to Disease348645
BioCentury BCIQC22orf34
ClinGenC22orf34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348645
Chemical/Pharm GKB GenePA145149461
Clinical trialC22orf34
Miscellaneous
canSAR (ICR)C22orf34 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf34
EVEXC22orf34
GoPubMedC22orf34
iHOPC22orf34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:28 CET 2017

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