Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C22orf39 (chromosome 22 open reading frame 39)

Identity

Alias_symbol (synonym)MGC74441
Other alias-
HGNC (Hugo) C22orf39
LocusID (NCBI) 128977
Atlas_Id 61138
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19428410 and ends at 19435755 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf39   27012
Cards
Entrez_Gene (NCBI)C22orf39  128977  chromosome 22 open reading frame 39
Aliases
GeneCards (Weizmann)C22orf39
Ensembl hg19 (Hinxton)ENSG00000242259 [Gene_View]  chr22:19428410-19435755 [Contig_View]  C22orf39 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242259 [Gene_View]  chr22:19428410-19435755 [Contig_View]  C22orf39 [Vega]
ICGC DataPortalENSG00000242259
TCGA cBioPortalC22orf39
AceView (NCBI)C22orf39
Genatlas (Paris)C22orf39
WikiGenes128977
SOURCE (Princeton)C22orf39
Genetics Home Reference (NIH)C22orf39
Genomic and cartography
GoldenPath hg19 (UCSC)C22orf39  -     chr22:19428410-19435755 -  22q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C22orf39  -     22q11.21   [Description]    (hg38-Dec_2013)
EnsemblC22orf39 - 22q11.21 [CytoView hg19]  C22orf39 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIC22orf39 [Mapview hg19]  C22orf39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI379685 AK095271 AK290073 BC030758 BC046204
RefSeq transcript (Entrez)NM_001166242 NM_173793
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929429
Consensus coding sequences : CCDS (NCBI)C22orf39
Cluster EST : UnigeneHs.659565 [ NCBI ]
CGAP (NCI)Hs.659565
Alternative Splicing GalleryENSG00000242259
Gene ExpressionC22orf39 [ NCBI-GEO ]   C22orf39 [ EBI - ARRAY_EXPRESS ]   C22orf39 [ SEEK ]   C22orf39 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128977
GTEX Portal (Tissue expression)C22orf39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P5X5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P5X5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P5X5
Splice isoforms : SwissVarQ6P5X5
PhosPhoSitePlusQ6P5X5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C22orf39
DMDM Disease mutations128977
Blocks (Seattle)C22orf39
SuperfamilyQ6P5X5
Human Protein AtlasENSG00000242259
Peptide AtlasQ6P5X5
HPRD14041
IPIIPI00418459   IPI00852993   IPI00853472   IPI01012343   
Protein Interaction databases
DIP (DOE-UCLA)Q6P5X5
IntAct (EBI)Q6P5X5
FunCoupENSG00000242259
BioGRIDC22orf39
STRING (EMBL)C22orf39
ZODIACC22orf39
Ontologies - Pathways
QuickGOQ6P5X5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC22orf39
Atlas of Cancer Signalling NetworkC22orf39
Wikipedia pathwaysC22orf39
Orthology - Evolution
OrthoDB128977
GeneTree (enSembl)ENSG00000242259
Phylogenetic Trees/Animal Genes : TreeFamC22orf39
HOVERGENQ6P5X5
HOGENOMQ6P5X5
Homologs : HomoloGeneC22orf39
Homology/Alignments : Family Browser (UCSC)C22orf39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf39
dbVarC22orf39
ClinVarC22orf39
1000_GenomesC22orf39 
Exome Variant ServerC22orf39
ExAC (Exome Aggregation Consortium)C22orf39 (select the gene name)
Genetic variants : HAPMAP128977
Genomic Variants (DGV)C22orf39 [DGVbeta]
DECIPHER (Syndromes)22:19428410-19435755  ENSG00000242259
CONAN: Copy Number AnalysisC22orf39 
Mutations
ICGC Data PortalC22orf39 
TCGA Data PortalC22orf39 
Broad Tumor PortalC22orf39
OASIS PortalC22orf39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf39
DgiDB (Drug Gene Interaction Database)C22orf39
DoCM (Curated mutations)C22orf39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf39 (select a term)
intoGenC22orf39
Cancer3DC22orf39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC22orf39
Genetic Testing Registry C22orf39
NextProtQ6P5X5 [Medical]
TSGene128977
GENETestsC22orf39
Huge Navigator C22orf39 [HugePedia]
snp3D : Map Gene to Disease128977
BioCentury BCIQC22orf39
ClinGenC22orf39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128977
Chemical/Pharm GKB GenePA162378995
Clinical trialC22orf39
Miscellaneous
canSAR (ICR)C22orf39 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf39
EVEXC22orf39
GoPubMedC22orf39
iHOPC22orf39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:11 CET 2017

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