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C22orf42 (chromosome 22 open reading frame 42)

Identity

Other aliasdJ90G24.6
HGNC (Hugo) C22orf42
LocusID (NCBI) 150297
Atlas_Id 61139
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32149532 and ends at 32159256 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf42   27160
Cards
Entrez_Gene (NCBI)C22orf42  150297  chromosome 22 open reading frame 42
AliasesdJ90G24.6
GeneCards (Weizmann)C22orf42
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:32149532-32159256 [Contig_View]  C22orf42 [Vega]
TCGA cBioPortalC22orf42
AceView (NCBI)C22orf42
Genatlas (Paris)C22orf42
WikiGenes150297
SOURCE (Princeton)C22orf42
Genetics Home Reference (NIH)C22orf42
Genomic and cartography
GoldenPath hg38 (UCSC)C22orf42  -     chr22:32149532-32159256 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C22orf42  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblC22orf42 - 22q12.3 [CytoView hg19]  C22orf42 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIC22orf42 [Mapview hg19]  C22orf42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040263 BC139845 CR456485
RefSeq transcript (Entrez)NM_001010859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C22orf42
Cluster EST : UnigeneHs.426551 [ NCBI ]
CGAP (NCI)Hs.426551
Gene ExpressionC22orf42 [ NCBI-GEO ]   C22orf42 [ EBI - ARRAY_EXPRESS ]   C22orf42 [ SEEK ]   C22orf42 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150297
GTEX Portal (Tissue expression)C22orf42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IC83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IC83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IC83
Splice isoforms : SwissVarQ6IC83
PhosPhoSitePlusQ6IC83
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C22orf42
DMDM Disease mutations150297
Blocks (Seattle)C22orf42
SuperfamilyQ6IC83
Peptide AtlasQ6IC83
HPRD14087
IPIIPI00419268   
Protein Interaction databases
DIP (DOE-UCLA)Q6IC83
IntAct (EBI)Q6IC83
BioGRIDC22orf42
STRING (EMBL)C22orf42
ZODIACC22orf42
Ontologies - Pathways
QuickGOQ6IC83
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC22orf42
Atlas of Cancer Signalling NetworkC22orf42
Wikipedia pathwaysC22orf42
Orthology - Evolution
OrthoDB150297
Phylogenetic Trees/Animal Genes : TreeFamC22orf42
HOVERGENQ6IC83
HOGENOMQ6IC83
Homologs : HomoloGeneC22orf42
Homology/Alignments : Family Browser (UCSC)C22orf42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf42
dbVarC22orf42
ClinVarC22orf42
1000_GenomesC22orf42 
Exome Variant ServerC22orf42
ExAC (Exome Aggregation Consortium)C22orf42 (select the gene name)
Genetic variants : HAPMAP150297
Genomic Variants (DGV)C22orf42 [DGVbeta]
DECIPHERC22orf42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC22orf42 
Mutations
ICGC Data PortalC22orf42 
TCGA Data PortalC22orf42 
Broad Tumor PortalC22orf42
OASIS PortalC22orf42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf42
DgiDB (Drug Gene Interaction Database)C22orf42
DoCM (Curated mutations)C22orf42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf42 (select a term)
intoGenC22orf42
Cancer3DC22orf42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC22orf42
Genetic Testing Registry C22orf42
NextProtQ6IC83 [Medical]
TSGene150297
GENETestsC22orf42
Target ValidationC22orf42
Huge Navigator C22orf42 [HugePedia]
snp3D : Map Gene to Disease150297
BioCentury BCIQC22orf42
ClinGenC22orf42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150297
Chemical/Pharm GKB GenePA164717091
Clinical trialC22orf42
Miscellaneous
canSAR (ICR)C22orf42 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf42
EVEXC22orf42
GoPubMedC22orf42
iHOPC22orf42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:06 CEST 2017

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