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C22orf46 (chromosome 22 open reading frame 46)

Identity

Alias_symbol (synonym)FLJ23584
CTA-216E10.6
Other alias-
HGNC (Hugo) C22orf46
LocusID (NCBI) 79640
Atlas_Id 61140
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41690543 and ends at 41698136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DPYSL2 (8p21.2) / C22orf46 (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C22orf46   26294
Cards
Entrez_Gene (NCBI)C22orf46  79640  chromosome 22 open reading frame 46
Aliases
GeneCards (Weizmann)C22orf46
Ensembl hg19 (Hinxton)ENSG00000184208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184208 [Gene_View]  chr22:41690543-41698136 [Contig_View]  C22orf46 [Vega]
ICGC DataPortalENSG00000184208
TCGA cBioPortalC22orf46
AceView (NCBI)C22orf46
Genatlas (Paris)C22orf46
WikiGenes79640
SOURCE (Princeton)C22orf46
Genetics Home Reference (NIH)C22orf46
Genomic and cartography
GoldenPath hg38 (UCSC)C22orf46  -     chr22:41690543-41698136 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C22orf46  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblC22orf46 - 22q13.2 [CytoView hg19]  C22orf46 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIC22orf46 [Mapview hg19]  C22orf46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027237 AK095008 AK131457 BC007210 BC035403
RefSeq transcript (Entrez)NM_001142964 NM_024588
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C22orf46
Cluster EST : UnigeneHs.517653 [ NCBI ]
CGAP (NCI)Hs.517653
Alternative Splicing GalleryENSG00000184208
Gene ExpressionC22orf46 [ NCBI-GEO ]   C22orf46 [ EBI - ARRAY_EXPRESS ]   C22orf46 [ SEEK ]   C22orf46 [ MEM ]
Gene Expression Viewer (FireBrowse)C22orf46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79640
GTEX Portal (Tissue expression)C22orf46
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J442   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J442  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J442
Splice isoforms : SwissVarC9J442
PhosPhoSitePlusC9J442
Domains : Interpro (EBI)DUF4727   
Domain families : Pfam (Sanger)DUF4727 (PF15856)   
Domain families : Pfam (NCBI)pfam15856   
Conserved Domain (NCBI)C22orf46
DMDM Disease mutations79640
Blocks (Seattle)C22orf46
SuperfamilyC9J442
Human Protein AtlasENSG00000184208
Peptide AtlasC9J442
HPRD08037
IPIIPI00916461   IPI01018223   IPI00921496   IPI00002340   
Protein Interaction databases
DIP (DOE-UCLA)C9J442
IntAct (EBI)C9J442
FunCoupENSG00000184208
BioGRIDC22orf46
STRING (EMBL)C22orf46
ZODIACC22orf46
Ontologies - Pathways
QuickGOC9J442
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC22orf46
Atlas of Cancer Signalling NetworkC22orf46
Wikipedia pathwaysC22orf46
Orthology - Evolution
OrthoDB79640
GeneTree (enSembl)ENSG00000184208
Phylogenetic Trees/Animal Genes : TreeFamC22orf46
HOVERGENC9J442
HOGENOMC9J442
Homologs : HomoloGeneC22orf46
Homology/Alignments : Family Browser (UCSC)C22orf46
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC22orf46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C22orf46
dbVarC22orf46
ClinVarC22orf46
1000_GenomesC22orf46 
Exome Variant ServerC22orf46
ExAC (Exome Aggregation Consortium)C22orf46 (select the gene name)
Genetic variants : HAPMAP79640
Genomic Variants (DGV)C22orf46 [DGVbeta]
DECIPHERC22orf46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC22orf46 
Mutations
ICGC Data PortalC22orf46 
TCGA Data PortalC22orf46 
Broad Tumor PortalC22orf46
OASIS PortalC22orf46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC22orf46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC22orf46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C22orf46
DgiDB (Drug Gene Interaction Database)C22orf46
DoCM (Curated mutations)C22orf46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C22orf46 (select a term)
intoGenC22orf46
Cancer3DC22orf46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC22orf46
Genetic Testing Registry C22orf46
NextProtC9J442 [Medical]
TSGene79640
GENETestsC22orf46
Target ValidationC22orf46
Huge Navigator C22orf46 [HugePedia]
snp3D : Map Gene to Disease79640
BioCentury BCIQC22orf46
ClinGenC22orf46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79640
Chemical/Pharm GKB GenePA165378333
Clinical trialC22orf46
Miscellaneous
canSAR (ICR)C22orf46 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC22orf46
EVEXC22orf46
GoPubMedC22orf46
iHOPC22orf46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:14 CEST 2017

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