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C2CD2 (C2 calcium-dependent domain containing 2)

Identity

Alias_namesC21orf25
chromosome 21 open reading frame 25
Alias_symbol (synonym)TMEM24L
DKFZP586F0422
C21orf258
Other alias
HGNC (Hugo) C2CD2
LocusID (NCBI) 25966
Atlas_Id 61142
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43305219 and ends at 43373999 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C2CD2 (21q22.3) / HECTD2 (10q23.32)C2CD2 (21q22.3) / MID2 (Xq22.3)C2CD2 (21q22.3) / TFF1 (21q22.3)
C2CD2 (21q22.3) / ZBTB21 (21q22.3)C2CD2 ZNF295C2CD2 MID2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD2   1266
Cards
Entrez_Gene (NCBI)C2CD2  25966  C2 calcium-dependent domain containing 2
AliasesC21orf25; C21orf258; TMEM24L
GeneCards (Weizmann)C2CD2
Ensembl hg19 (Hinxton)ENSG00000157617 [Gene_View]  chr21:43305219-43373999 [Contig_View]  C2CD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157617 [Gene_View]  chr21:43305219-43373999 [Contig_View]  C2CD2 [Vega]
ICGC DataPortalENSG00000157617
TCGA cBioPortalC2CD2
AceView (NCBI)C2CD2
Genatlas (Paris)C2CD2
WikiGenes25966
SOURCE (Princeton)C2CD2
Genetics Home Reference (NIH)C2CD2
Genomic and cartography
GoldenPath hg19 (UCSC)C2CD2  -     chr21:43305219-43373999 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2CD2  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblC2CD2 - 21q22.3 [CytoView hg19]  C2CD2 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIC2CD2 [Mapview hg19]  C2CD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB047784 AB047785 AI143200 AI298951 AK125120
RefSeq transcript (Entrez)NM_015500 NM_199050
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)C2CD2
Cluster EST : UnigeneHs.675058 [ NCBI ]
CGAP (NCI)Hs.675058
Alternative Splicing GalleryENSG00000157617
Gene ExpressionC2CD2 [ NCBI-GEO ]   C2CD2 [ EBI - ARRAY_EXPRESS ]   C2CD2 [ SEEK ]   C2CD2 [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25966
GTEX Portal (Tissue expression)C2CD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y426   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y426  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y426
Splice isoforms : SwissVarQ9Y426
PhosPhoSitePlusQ9Y426
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)C2CD2
DMDM Disease mutations25966
Blocks (Seattle)C2CD2
SuperfamilyQ9Y426
Human Protein AtlasENSG00000157617
Peptide AtlasQ9Y426
HPRD10745
IPIIPI00471978   IPI00747092   IPI00790223   IPI00441199   IPI00443047   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y426
IntAct (EBI)Q9Y426
FunCoupENSG00000157617
BioGRIDC2CD2
STRING (EMBL)C2CD2
ZODIACC2CD2
Ontologies - Pathways
QuickGOQ9Y426
Ontology : AmiGOextracellular region  nucleus  cytosol  
Ontology : EGO-EBIextracellular region  nucleus  cytosol  
NDEx NetworkC2CD2
Atlas of Cancer Signalling NetworkC2CD2
Wikipedia pathwaysC2CD2
Orthology - Evolution
OrthoDB25966
GeneTree (enSembl)ENSG00000157617
Phylogenetic Trees/Animal Genes : TreeFamC2CD2
HOVERGENQ9Y426
HOGENOMQ9Y426
Homologs : HomoloGeneC2CD2
Homology/Alignments : Family Browser (UCSC)C2CD2
Gene fusions - Rearrangements
Fusion: TCGAC2CD2 ZNF295
Fusion: TCGAC2CD2 MID2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD2
dbVarC2CD2
ClinVarC2CD2
1000_GenomesC2CD2 
Exome Variant ServerC2CD2
ExAC (Exome Aggregation Consortium)C2CD2 (select the gene name)
Genetic variants : HAPMAP25966
Genomic Variants (DGV)C2CD2 [DGVbeta]
DECIPHER (Syndromes)21:43305219-43373999  ENSG00000157617
CONAN: Copy Number AnalysisC2CD2 
Mutations
ICGC Data PortalC2CD2 
TCGA Data PortalC2CD2 
Broad Tumor PortalC2CD2
OASIS PortalC2CD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2CD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD2
DgiDB (Drug Gene Interaction Database)C2CD2
DoCM (Curated mutations)C2CD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD2 (select a term)
intoGenC2CD2
Cancer3DC2CD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2CD2
Genetic Testing Registry C2CD2
NextProtQ9Y426 [Medical]
TSGene25966
GENETestsC2CD2
Huge Navigator C2CD2 [HugePedia]
snp3D : Map Gene to Disease25966
BioCentury BCIQC2CD2
ClinGenC2CD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25966
Chemical/Pharm GKB GenePA162379018
Clinical trialC2CD2
Miscellaneous
canSAR (ICR)C2CD2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD2
EVEXC2CD2
GoPubMedC2CD2
iHOPC2CD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:12 CET 2017

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