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C2CD2 (C2 calcium dependent domain containing 2)

Identity

Alias (NCBI)C21orf25
C21orf258
TMEM24L
HGNC (Hugo) C2CD2
HGNC Alias symbTMEM24L
DKFZP586F0422
C21orf258
HGNC Alias nameTMEM24-like
HGNC Previous nameC21orf25
HGNC Previous namechromosome 21 open reading frame 25
LocusID (NCBI) 25966
Atlas_Id 61142
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41885112 and ends at 41926703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C2CD2 (21q22.3) / HECTD2 (10q23.32)C2CD2 (21q22.3) / MID2 (Xq22.3)C2CD2 (21q22.3) / TFF1 (21q22.3)
C2CD2 (21q22.3) / ZBTB21 (21q22.3)C2CD2 ZNF295C2CD2 MID2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C2CD2   1266
Cards
Entrez_Gene (NCBI)C2CD2    C2 calcium dependent domain containing 2
AliasesC21orf25; C21orf258; TMEM24L
GeneCards (Weizmann)C2CD2
Ensembl hg19 (Hinxton)ENSG00000157617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157617 [Gene_View]  ENSG00000157617 [Sequence]  chr21:41885112-41926703 [Contig_View]  C2CD2 [Vega]
ICGC DataPortalENSG00000157617
TCGA cBioPortalC2CD2
AceView (NCBI)C2CD2
Genatlas (Paris)C2CD2
SOURCE (Princeton)C2CD2
Genetics Home Reference (NIH)C2CD2
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD2  -     chr21:41885112-41926703 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD2  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathC2CD2 - 21q22.3 [CytoView hg19]  C2CD2 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000157617
Genome Data Viewer NCBIC2CD2 [Mapview hg19]  
OMIM617581   
Gene and transcription
Genbank (Entrez)AB047784 AB047785 AI143200 AI298951 AK125120
RefSeq transcript (Entrez)NM_015500 NM_199050
Consensus coding sequences : CCDS (NCBI)C2CD2
Gene ExpressionC2CD2 [ NCBI-GEO ]   C2CD2 [ EBI - ARRAY_EXPRESS ]   C2CD2 [ SEEK ]   C2CD2 [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD2 [ Firebrowse - Broad ]
GenevisibleExpression of C2CD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25966
GTEX Portal (Tissue expression)C2CD2
Human Protein AtlasENSG00000157617-C2CD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y426   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y426  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y426
PhosPhoSitePlusQ9Y426
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf    C2CD2/C2CD2L    SMP_C2CD2L   
Domain families : Pfam (Sanger)C2 (PF00168)    SMP_C2CD2L (PF18696)   
Domain families : Pfam (NCBI)pfam00168    pfam18696   
Conserved Domain (NCBI)C2CD2
SuperfamilyQ9Y426
AlphaFold pdb e-kbQ9Y426   
Human Protein Atlas [tissue]ENSG00000157617-C2CD2 [tissue]
HPRD10745
Protein Interaction databases
DIP (DOE-UCLA)Q9Y426
IntAct (EBI)Q9Y426
BioGRIDC2CD2
STRING (EMBL)C2CD2
ZODIACC2CD2
Ontologies - Pathways
QuickGOQ9Y426
Ontology : AmiGOnucleus  cytosol  integral component of membrane  
Ontology : EGO-EBInucleus  cytosol  integral component of membrane  
NDEx NetworkC2CD2
Atlas of Cancer Signalling NetworkC2CD2
Wikipedia pathwaysC2CD2
Orthology - Evolution
OrthoDB25966
GeneTree (enSembl)ENSG00000157617
Phylogenetic Trees/Animal Genes : TreeFamC2CD2
Homologs : HomoloGeneC2CD2
Homology/Alignments : Family Browser (UCSC)C2CD2
Gene fusions - Rearrangements
Fusion : QuiverC2CD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD2
dbVarC2CD2
ClinVarC2CD2
MonarchC2CD2
1000_GenomesC2CD2 
Exome Variant ServerC2CD2
GNOMAD BrowserENSG00000157617
Varsome BrowserC2CD2
ACMGC2CD2 variants
VarityQ9Y426
Genomic Variants (DGV)C2CD2 [DGVbeta]
DECIPHERC2CD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD2 
Mutations
ICGC Data PortalC2CD2 
TCGA Data PortalC2CD2 
Broad Tumor PortalC2CD2
OASIS PortalC2CD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC2CD2
Mutations and Diseases : HGMDC2CD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC2CD2
DgiDB (Drug Gene Interaction Database)C2CD2
DoCM (Curated mutations)C2CD2
CIViC (Clinical Interpretations of Variants in Cancer)C2CD2
Cancer3DC2CD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617581   
Orphanet
DisGeNETC2CD2
MedgenC2CD2
Genetic Testing Registry C2CD2
NextProtQ9Y426 [Medical]
GENETestsC2CD2
Target ValidationC2CD2
Huge Navigator C2CD2 [HugePedia]
ClinGenC2CD2
Clinical trials, drugs, therapy
MyCancerGenomeC2CD2
Protein Interactions : CTDC2CD2
Pharm GKB GenePA162379018
PharosQ9Y426
Clinical trialC2CD2
Miscellaneous
canSAR (ICR)C2CD2
HarmonizomeC2CD2
DataMed IndexC2CD2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC2CD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:44:12 CEST 2021

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