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C2CD3 (C2 calcium dependent domain containing 3)

Identity

Alias_symbol (synonym)DKFZP586P0123
Other aliasOFD14
HGNC (Hugo) C2CD3
LocusID (NCBI) 26005
Atlas_Id 54170
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74012714 and ends at 74171019 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C2CD3 (11q13.4) / ABCA13 (7p12.3)C2CD3 (11q13.4) / NCAM1 (11q23.2)C2CD3 (11q13.4) / NISCH (3p21.1)
C2CD3 (11q13.4) / P2RY6 (11q13.4)C2CD3 (11q13.4) / RNF169 (11q13.4)C2CD3 (11q13.4) / SOX4 (6p22.3)
C2CD3 (11q13.4) / SYTL1 (1p36.11)C2CD3 (11q13.4) / TENM4 (11q14.1)CLPB (11q13.4) / C2CD3 (11q13.4)
FAM168A (11q13.4) / C2CD3 (11q13.4)FLNA (Xq28) / C2CD3 (11q13.4)KMT2A (11q23.3) / C2CD3 (11q13.4)
MS4A7 (11q12.2) / C2CD3 (11q13.4)SOX4 (6p22.3) / C2CD3 (11q13.4)ZDHHC24 (11q13.2) / C2CD3 (11q13.4)
C2CD3 11q13.4 / ABCA13 7p12.3C2CD3 11q13.4 / NCAM1 11q23.2C2CD3 11q13.4 ODZ4
C2CD3 11q13.4 / P2RY6 11q13.4C2CD3 11q13.4 / RNF169 11q13.4C2CD3 11q13.4 / SYTL1 1p36.11
CLPB 11q13.4 / C2CD3 11q13.4FAM168A 11q13.4 / C2CD3 11q13.4ZDHHC24 11q13.2 / C2CD3 11q13.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD3   24564
Cards
Entrez_Gene (NCBI)C2CD3  26005  C2 calcium dependent domain containing 3
AliasesOFD14
GeneCards (Weizmann)C2CD3
Ensembl hg19 (Hinxton)ENSG00000168014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168014 [Gene_View]  chr11:74012714-74171019 [Contig_View]  C2CD3 [Vega]
ICGC DataPortalENSG00000168014
TCGA cBioPortalC2CD3
AceView (NCBI)C2CD3
Genatlas (Paris)C2CD3
WikiGenes26005
SOURCE (Princeton)C2CD3
Genetics Home Reference (NIH)C2CD3
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD3  -     chr11:74012714-74171019 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD3  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblC2CD3 - 11q13.4 [CytoView hg19]  C2CD3 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIC2CD3 [Mapview hg19]  C2CD3 [Mapview hg38]
OMIM615944   615948   
Gene and transcription
Genbank (Entrez)AB231762 AB231763 AB231764 AI873280 AK091397
RefSeq transcript (Entrez)NM_001286577 NM_015531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD3
Cluster EST : UnigeneHs.694798 [ NCBI ]
CGAP (NCI)Hs.694798
Alternative Splicing GalleryENSG00000168014
Gene ExpressionC2CD3 [ NCBI-GEO ]   C2CD3 [ EBI - ARRAY_EXPRESS ]   C2CD3 [ SEEK ]   C2CD3 [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26005
GTEX Portal (Tissue expression)C2CD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4AC94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4AC94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4AC94
Splice isoforms : SwissVarQ4AC94
PhosPhoSitePlusQ4AC94
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)C2CD3
DMDM Disease mutations26005
Blocks (Seattle)C2CD3
SuperfamilyQ4AC94
Human Protein AtlasENSG00000168014
Peptide AtlasQ4AC94
HPRD16811
IPIIPI00478196   IPI00410086   IPI00942656   IPI00952691   IPI00900256   IPI01018717   IPI00168123   IPI01018813   IPI01015396   IPI01012851   IPI01013277   
Protein Interaction databases
DIP (DOE-UCLA)Q4AC94
IntAct (EBI)Q4AC94
FunCoupENSG00000168014
BioGRIDC2CD3
STRING (EMBL)C2CD3
ZODIACC2CD3
Ontologies - Pathways
QuickGOQ4AC94
Ontology : AmiGOin utero embryonic development  heart looping  protein binding  centrosome  centriole  cytosol  brain development  regulation of smoothened signaling pathway  protein processing  neural tube development  neural plate axis specification  regulation of proteolysis  centriolar satellite  ciliary basal body  embryonic digit morphogenesis  centriole elongation  protein localization to centrosome  ciliary basal body docking  non-motile cilium assembly  
Ontology : EGO-EBIin utero embryonic development  heart looping  protein binding  centrosome  centriole  cytosol  brain development  regulation of smoothened signaling pathway  protein processing  neural tube development  neural plate axis specification  regulation of proteolysis  centriolar satellite  ciliary basal body  embryonic digit morphogenesis  centriole elongation  protein localization to centrosome  ciliary basal body docking  non-motile cilium assembly  
NDEx NetworkC2CD3
Atlas of Cancer Signalling NetworkC2CD3
Wikipedia pathwaysC2CD3
Orthology - Evolution
OrthoDB26005
GeneTree (enSembl)ENSG00000168014
Phylogenetic Trees/Animal Genes : TreeFamC2CD3
HOVERGENQ4AC94
HOGENOMQ4AC94
Homologs : HomoloGeneC2CD3
Homology/Alignments : Family Browser (UCSC)C2CD3
Gene fusions - Rearrangements
Fusion : MitelmanC2CD3/ABCA13 [11q13.4/7p12.3]  
Fusion : MitelmanC2CD3/NCAM1 [11q13.4/11q23.2]  [t(11;11)(q13;q23)]  
Fusion : MitelmanC2CD3/P2RY6 [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanC2CD3/RNF169 [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanC2CD3/SYTL1 [11q13.4/1p36.11]  [t(1;11)(p36;q13)]  
Fusion : MitelmanC2CD3/TENM4 [11q13.4/11q14.1]  [t(11;11)(q13;q14)]  
Fusion : MitelmanCLPB/C2CD3 [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanFAM168A/C2CD3 [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanMS4A7/C2CD3 [11q12.2/11q13.4]  [t(11;11)(q12;q13)]  
Fusion : MitelmanZDHHC24/C2CD3 [11q13.2/11q13.4]  [t(11;11)(q13;q13)]  
Fusion: TCGAC2CD3 11q13.4 ABCA13 7p12.3 BRCA
Fusion: TCGAC2CD3 11q13.4 NCAM1 11q23.2 LUAD
Fusion: TCGAC2CD3 11q13.4 ODZ4 BRCA
Fusion: TCGAC2CD3 11q13.4 P2RY6 11q13.4 BRCA
Fusion: TCGAC2CD3 11q13.4 RNF169 11q13.4 BRCA
Fusion: TCGAC2CD3 11q13.4 SYTL1 1p36.11 OV
Fusion: TCGACLPB 11q13.4 C2CD3 11q13.4 BRCA
Fusion: TCGAFAM168A 11q13.4 C2CD3 11q13.4 LUAD
Fusion: TCGAZDHHC24 11q13.2 C2CD3 11q13.4 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD3
dbVarC2CD3
ClinVarC2CD3
1000_GenomesC2CD3 
Exome Variant ServerC2CD3
ExAC (Exome Aggregation Consortium)C2CD3 (select the gene name)
Genetic variants : HAPMAP26005
Genomic Variants (DGV)C2CD3 [DGVbeta]
DECIPHERC2CD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD3 
Mutations
ICGC Data PortalC2CD3 
TCGA Data PortalC2CD3 
Broad Tumor PortalC2CD3
OASIS PortalC2CD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2CD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD3
DgiDB (Drug Gene Interaction Database)C2CD3
DoCM (Curated mutations)C2CD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD3 (select a term)
intoGenC2CD3
Cancer3DC2CD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615944    615948   
Orphanet23271   
MedgenC2CD3
Genetic Testing Registry C2CD3
NextProtQ4AC94 [Medical]
TSGene26005
GENETestsC2CD3
Huge Navigator C2CD3 [HugePedia]
snp3D : Map Gene to Disease26005
BioCentury BCIQC2CD3
ClinGenC2CD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26005
Chemical/Pharm GKB GenePA162379082
Clinical trialC2CD3
Miscellaneous
canSAR (ICR)C2CD3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD3
EVEXC2CD3
GoPubMedC2CD3
iHOPC2CD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:08:23 CEST 2017

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