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C2CD3 (C2 domain containing 3 centriole elongation regulator)

Identity

Alias (NCBI)OFD14
HGNC (Hugo) C2CD3
HGNC Alias symbDKFZP586P0123
HGNC Previous nameC2 calcium dependent domain containing 3
LocusID (NCBI) 26005
Atlas_Id 54170
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74034442 and ends at 74171002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C2CD3 (11q13.4) / ABCA13 (7p12.3)C2CD3 (11q13.4) / NCAM1 (11q23.2)C2CD3 (11q13.4) / NISCH (3p21.1)
C2CD3 (11q13.4) / P2RY6 (11q13.4)C2CD3 (11q13.4) / RNF169 (11q13.4)C2CD3 (11q13.4) / SOX4 (6p22.3)
C2CD3 (11q13.4) / SYTL1 (1p36.11)C2CD3 (11q13.4) / TENM4 (11q14.1)CLPB (11q13.4) / C2CD3 (11q13.4)
FAM168A (11q13.4) / C2CD3 (11q13.4)FLNA (Xq28) / C2CD3 (11q13.4)KMT2A (11q23.3) / C2CD3 (11q13.4)
MS4A7 (11q12.2) / C2CD3 (11q13.4)SOX4 (6p22.3) / C2CD3 (11q13.4)ZDHHC24 (11q13.2) / C2CD3 (11q13.4)
C2CD3 11q13.4 / ABCA13 7p12.3C2CD3 11q13.4 / NCAM1 11q23.2C2CD3 11q13.4 ODZ4
C2CD3 11q13.4 / P2RY6 11q13.4C2CD3 11q13.4 / RNF169 11q13.4C2CD3 11q13.4 / SYTL1 1p36.11
CLPB 11q13.4 / C2CD3 11q13.4FAM168A 11q13.4 / C2CD3 11q13.4ZDHHC24 11q13.2 / C2CD3 11q13.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q13;q23) KMT2A/C2CD3


External links

Nomenclature
HGNC (Hugo)C2CD3   24564
Cards
Entrez_Gene (NCBI)C2CD3    C2 domain containing 3 centriole elongation regulator
AliasesOFD14
GeneCards (Weizmann)C2CD3
Ensembl hg19 (Hinxton)ENSG00000168014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168014 [Gene_View]  ENSG00000168014 [Sequence]  chr11:74034442-74171002 [Contig_View]  C2CD3 [Vega]
ICGC DataPortalENSG00000168014
TCGA cBioPortalC2CD3
AceView (NCBI)C2CD3
Genatlas (Paris)C2CD3
SOURCE (Princeton)C2CD3
Genetics Home Reference (NIH)C2CD3
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD3  -     chr11:74034442-74171002 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD3  -     11q13.4   [Description]    (hg19-Feb_2009)
GoldenPathC2CD3 - 11q13.4 [CytoView hg19]  C2CD3 - 11q13.4 [CytoView hg38]
ImmunoBaseENSG00000168014
Genome Data Viewer NCBIC2CD3 [Mapview hg19]  
OMIM615944   615948   
Gene and transcription
Genbank (Entrez)AB231762 AB231763 AB231764 AI873280 AK091397
RefSeq transcript (Entrez)NM_001286577 NM_015531
Consensus coding sequences : CCDS (NCBI)C2CD3
Gene ExpressionC2CD3 [ NCBI-GEO ]   C2CD3 [ EBI - ARRAY_EXPRESS ]   C2CD3 [ SEEK ]   C2CD3 [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD3 [ Firebrowse - Broad ]
GenevisibleExpression of C2CD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26005
GTEX Portal (Tissue expression)C2CD3
Human Protein AtlasENSG00000168014-C2CD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2CD3
Human Protein Atlas [tissue]ENSG00000168014-C2CD3 [tissue]
HPRD16811
Protein Interaction databases
BioGRIDC2CD3
STRING (EMBL)C2CD3
ZODIACC2CD3
Ontologies - Pathways
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC2CD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:01:46 CEST 2021

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