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C2CD4A (C2 calcium dependent domain containing 4A)

Identity

Alias_namesFAM148A
family with sequence similarity 148
Alias_symbol (synonym)NLF1
Other alias
HGNC (Hugo) C2CD4A
LocusID (NCBI) 145741
Atlas_Id 56095
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 62066977 and ends at 62070917 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD4A   33627
Cards
Entrez_Gene (NCBI)C2CD4A  145741  C2 calcium dependent domain containing 4A
AliasesFAM148A; NLF1
GeneCards (Weizmann)C2CD4A
Ensembl hg19 (Hinxton)ENSG00000198535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198535 [Gene_View]  ENSG00000198535 [Sequence]  chr15:62066977-62070917 [Contig_View]  C2CD4A [Vega]
ICGC DataPortalENSG00000198535
TCGA cBioPortalC2CD4A
AceView (NCBI)C2CD4A
Genatlas (Paris)C2CD4A
WikiGenes145741
SOURCE (Princeton)C2CD4A
Genetics Home Reference (NIH)C2CD4A
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD4A  -     chr15:62066977-62070917 +  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD4A  -     15q22.2   [Description]    (hg19-Feb_2009)
EnsemblC2CD4A - 15q22.2 [CytoView hg19]  C2CD4A - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBIC2CD4A [Mapview hg19]  C2CD4A [Mapview hg38]
OMIM610343   
Gene and transcription
Genbank (Entrez)AF504646 BF196228 BM742013 BX648578
RefSeq transcript (Entrez)NM_207322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD4A
Cluster EST : UnigeneHs.202656 [ NCBI ]
CGAP (NCI)Hs.202656
Alternative Splicing GalleryENSG00000198535
Gene ExpressionC2CD4A [ NCBI-GEO ]   C2CD4A [ EBI - ARRAY_EXPRESS ]   C2CD4A [ SEEK ]   C2CD4A [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145741
GTEX Portal (Tissue expression)C2CD4A
Human Protein AtlasENSG00000198535-C2CD4A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCU7
Splice isoforms : SwissVarQ8NCU7
PhosPhoSitePlusQ8NCU7
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2CD4A
DMDM Disease mutations145741
Blocks (Seattle)C2CD4A
SuperfamilyQ8NCU7
Human Protein Atlas [tissue]ENSG00000198535-C2CD4A [tissue]
Peptide AtlasQ8NCU7
HPRD14830
IPIIPI00301711   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCU7
IntAct (EBI)Q8NCU7
FunCoupENSG00000198535
BioGRIDC2CD4A
STRING (EMBL)C2CD4A
ZODIACC2CD4A
Ontologies - Pathways
QuickGOQ8NCU7
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  nucleus  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  nucleus  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
NDEx NetworkC2CD4A
Atlas of Cancer Signalling NetworkC2CD4A
Wikipedia pathwaysC2CD4A
Orthology - Evolution
OrthoDB145741
GeneTree (enSembl)ENSG00000198535
Phylogenetic Trees/Animal Genes : TreeFamC2CD4A
HOVERGENQ8NCU7
HOGENOMQ8NCU7
Homologs : HomoloGeneC2CD4A
Homology/Alignments : Family Browser (UCSC)C2CD4A
Gene fusions - Rearrangements
Fusion : QuiverC2CD4A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD4A
dbVarC2CD4A
ClinVarC2CD4A
1000_GenomesC2CD4A 
Exome Variant ServerC2CD4A
ExAC (Exome Aggregation Consortium)ENSG00000198535
GNOMAD BrowserENSG00000198535
Genetic variants : HAPMAP145741
Genomic Variants (DGV)C2CD4A [DGVbeta]
DECIPHERC2CD4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD4A 
Mutations
ICGC Data PortalC2CD4A 
TCGA Data PortalC2CD4A 
Broad Tumor PortalC2CD4A
OASIS PortalC2CD4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD4A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2CD4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD4A
DgiDB (Drug Gene Interaction Database)C2CD4A
DoCM (Curated mutations)C2CD4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD4A (select a term)
intoGenC2CD4A
Cancer3DC2CD4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610343   
Orphanet
DisGeNETC2CD4A
MedgenC2CD4A
Genetic Testing Registry C2CD4A
NextProtQ8NCU7 [Medical]
TSGene145741
GENETestsC2CD4A
Target ValidationC2CD4A
Huge Navigator C2CD4A [HugePedia]
snp3D : Map Gene to Disease145741
BioCentury BCIQC2CD4A
ClinGenC2CD4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145741
Chemical/Pharm GKB GenePA165478510
Clinical trialC2CD4A
Miscellaneous
canSAR (ICR)C2CD4A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD4A
EVEXC2CD4A
GoPubMedC2CD4A
iHOPC2CD4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:16:55 CEST 2018

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