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C2CD4B (C2 calcium dependent domain containing 4B)

Identity

Alias_namesFAM148B
family with sequence similarity 148
Alias_symbol (synonym)NLF2
Other alias
HGNC (Hugo) C2CD4B
LocusID (NCBI) 388125
Atlas_Id 56365
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 62163538 and ends at 62165283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD4B   33628
Cards
Entrez_Gene (NCBI)C2CD4B  388125  C2 calcium dependent domain containing 4B
AliasesFAM148B; NLF2
GeneCards (Weizmann)C2CD4B
Ensembl hg19 (Hinxton)ENSG00000205502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205502 [Gene_View]  ENSG00000205502 [Sequence]  chr15:62163538-62165283 [Contig_View]  C2CD4B [Vega]
ICGC DataPortalENSG00000205502
TCGA cBioPortalC2CD4B
AceView (NCBI)C2CD4B
Genatlas (Paris)C2CD4B
WikiGenes388125
SOURCE (Princeton)C2CD4B
Genetics Home Reference (NIH)C2CD4B
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD4B  -     chr15:62163538-62165283 -  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD4B  -     15q22.2   [Description]    (hg19-Feb_2009)
EnsemblC2CD4B - 15q22.2 [CytoView hg19]  C2CD4B - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBIC2CD4B [Mapview hg19]  C2CD4B [Mapview hg38]
OMIM610344   
Gene and transcription
Genbank (Entrez)AW292865 BM023530 BM127548 BM850957 BM974537
RefSeq transcript (Entrez)NM_001007595
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD4B
Cluster EST : UnigeneHs.144372 [ NCBI ]
CGAP (NCI)Hs.144372
Alternative Splicing GalleryENSG00000205502
Gene ExpressionC2CD4B [ NCBI-GEO ]   C2CD4B [ EBI - ARRAY_EXPRESS ]   C2CD4B [ SEEK ]   C2CD4B [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388125
GTEX Portal (Tissue expression)C2CD4B
Human Protein AtlasENSG00000205502-C2CD4B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLJ0
Splice isoforms : SwissVarA6NLJ0
PhosPhoSitePlusA6NLJ0
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2CD4B
DMDM Disease mutations388125
Blocks (Seattle)C2CD4B
SuperfamilyA6NLJ0
Human Protein Atlas [tissue]ENSG00000205502-C2CD4B [tissue]
Peptide AtlasA6NLJ0
HPRD17636
IPIIPI00514369   
Protein Interaction databases
DIP (DOE-UCLA)A6NLJ0
IntAct (EBI)A6NLJ0
FunCoupENSG00000205502
BioGRIDC2CD4B
STRING (EMBL)C2CD4B
ZODIACC2CD4B
Ontologies - Pathways
QuickGOA6NLJ0
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  nucleus  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  nucleus  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
NDEx NetworkC2CD4B
Atlas of Cancer Signalling NetworkC2CD4B
Wikipedia pathwaysC2CD4B
Orthology - Evolution
OrthoDB388125
GeneTree (enSembl)ENSG00000205502
Phylogenetic Trees/Animal Genes : TreeFamC2CD4B
HOVERGENA6NLJ0
HOGENOMA6NLJ0
Homologs : HomoloGeneC2CD4B
Homology/Alignments : Family Browser (UCSC)C2CD4B
Gene fusions - Rearrangements
Fusion : QuiverC2CD4B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD4B
dbVarC2CD4B
ClinVarC2CD4B
1000_GenomesC2CD4B 
Exome Variant ServerC2CD4B
ExAC (Exome Aggregation Consortium)ENSG00000205502
GNOMAD BrowserENSG00000205502
Genetic variants : HAPMAP388125
Genomic Variants (DGV)C2CD4B [DGVbeta]
DECIPHERC2CD4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD4B 
Mutations
ICGC Data PortalC2CD4B 
TCGA Data PortalC2CD4B 
Broad Tumor PortalC2CD4B
OASIS PortalC2CD4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2CD4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD4B
DgiDB (Drug Gene Interaction Database)C2CD4B
DoCM (Curated mutations)C2CD4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD4B (select a term)
intoGenC2CD4B
Cancer3DC2CD4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610344   
Orphanet
DisGeNETC2CD4B
MedgenC2CD4B
Genetic Testing Registry C2CD4B
NextProtA6NLJ0 [Medical]
TSGene388125
GENETestsC2CD4B
Target ValidationC2CD4B
Huge Navigator C2CD4B [HugePedia]
snp3D : Map Gene to Disease388125
BioCentury BCIQC2CD4B
ClinGenC2CD4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388125
Chemical/Pharm GKB GenePA165478519
Clinical trialC2CD4B
Miscellaneous
canSAR (ICR)C2CD4B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD4B
EVEXC2CD4B
GoPubMedC2CD4B
iHOPC2CD4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:16:55 CEST 2018

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