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C2CD4C (C2 calcium dependent domain containing 4C)

Identity

Alias (NCBI)FAM148C
KIAA1957
NLF3
HGNC (Hugo) C2CD4C
HGNC Alias symbNLF3
HGNC Alias namenuclear localized factor 3
HGNC Previous nameKIAA1957
 FAM148C
HGNC Previous nameKIAA1957
 family with sequence similarity 148, member C
LocusID (NCBI) 126567
Atlas_Id 56540
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 405445 and ends at 409147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNN2 (19p13.3) / C2CD4C (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CNN2/C2CD4C (19p13)


External links

Nomenclature
HGNC (Hugo)C2CD4C   29417
Cards
Entrez_Gene (NCBI)C2CD4C  126567  C2 calcium dependent domain containing 4C
AliasesFAM148C; KIAA1957; NLF3
GeneCards (Weizmann)C2CD4C
Ensembl hg19 (Hinxton)ENSG00000183186 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183186 [Gene_View]  ENSG00000183186 [Sequence]  chr19:405445-409147 [Contig_View]  C2CD4C [Vega]
ICGC DataPortalENSG00000183186
TCGA cBioPortalC2CD4C
AceView (NCBI)C2CD4C
Genatlas (Paris)C2CD4C
WikiGenes126567
SOURCE (Princeton)C2CD4C
Genetics Home Reference (NIH)C2CD4C
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD4C  -     chr19:405445-409147 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD4C  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathC2CD4C - 19p13.3 [CytoView hg19]  C2CD4C - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000183186
genome Data Viewer NCBIC2CD4C [Mapview hg19]  
OMIM610336   
Gene and transcription
Genbank (Entrez)AB075837 AL834341
RefSeq transcript (Entrez)NM_001136263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD4C
Alternative Splicing GalleryENSG00000183186
Gene ExpressionC2CD4C [ NCBI-GEO ]   C2CD4C [ EBI - ARRAY_EXPRESS ]   C2CD4C [ SEEK ]   C2CD4C [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD4C [ Firebrowse - Broad ]
GenevisibleExpression of C2CD4C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126567
GTEX Portal (Tissue expression)C2CD4C
Human Protein AtlasENSG00000183186-C2CD4C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF44
Splice isoforms : SwissVarQ8TF44
PhosPhoSitePlusQ8TF44
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf    C2CD4   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)C2CD4C
DMDM Disease mutations126567
Blocks (Seattle)C2CD4C
SuperfamilyQ8TF44
Human Protein Atlas [tissue]ENSG00000183186-C2CD4C [tissue]
Peptide AtlasQ8TF44
IPIIPI00739203   IPI00745028   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF44
IntAct (EBI)Q8TF44
FunCoupENSG00000183186
BioGRIDC2CD4C
STRING (EMBL)C2CD4C
ZODIACC2CD4C
Ontologies - Pathways
QuickGOQ8TF44
Ontology : AmiGOcytosol  
Ontology : EGO-EBIcytosol  
NDEx NetworkC2CD4C
Atlas of Cancer Signalling NetworkC2CD4C
Wikipedia pathwaysC2CD4C
Orthology - Evolution
OrthoDB126567
GeneTree (enSembl)ENSG00000183186
Phylogenetic Trees/Animal Genes : TreeFamC2CD4C
HOGENOMQ8TF44
Homologs : HomoloGeneC2CD4C
Homology/Alignments : Family Browser (UCSC)C2CD4C
Gene fusions - Rearrangements
Fusion : QuiverC2CD4C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD4C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD4C
dbVarC2CD4C
ClinVarC2CD4C
1000_GenomesC2CD4C 
Exome Variant ServerC2CD4C
GNOMAD BrowserENSG00000183186
Varsome BrowserC2CD4C
Genetic variants : HAPMAP126567
Genomic Variants (DGV)C2CD4C [DGVbeta]
DECIPHERC2CD4C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD4C 
Mutations
ICGC Data PortalC2CD4C 
TCGA Data PortalC2CD4C 
Broad Tumor PortalC2CD4C
OASIS PortalC2CD4C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD4C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC2CD4C
Mutations and Diseases : HGMDC2CD4C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD4C
DgiDB (Drug Gene Interaction Database)C2CD4C
DoCM (Curated mutations)C2CD4C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD4C (select a term)
intoGenC2CD4C
Cancer3DC2CD4C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610336   
Orphanet
DisGeNETC2CD4C
MedgenC2CD4C
Genetic Testing Registry C2CD4C
NextProtQ8TF44 [Medical]
TSGene126567
GENETestsC2CD4C
Target ValidationC2CD4C
Huge Navigator C2CD4C [HugePedia]
snp3D : Map Gene to Disease126567
BioCentury BCIQC2CD4C
ClinGenC2CD4C
Clinical trials, drugs, therapy
Protein Interactions : CTD126567
Pharm GKB GenePA165393218
Clinical trialC2CD4C
Miscellaneous
canSAR (ICR)C2CD4C (select the gene name)
HarmonizomeC2CD4C
DataMed IndexC2CD4C
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD4C
EVEXC2CD4C
GoPubMedC2CD4C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:05:33 CEST 2020

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