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C2CD4C (C2 calcium dependent domain containing 4C)

Identity

Alias_namesKIAA1957
FAM148C
KIAA1957
family with sequence similarity 148, member C
Alias_symbol (synonym)NLF3
Other alias
HGNC (Hugo) C2CD4C
LocusID (NCBI) 126567
Atlas_Id 56540
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 405443 and ends at 409170 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CNN2 (19p13.3) / C2CD4C (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD4C   29417
Cards
Entrez_Gene (NCBI)C2CD4C  126567  C2 calcium dependent domain containing 4C
AliasesFAM148C; KIAA1957; NLF3
GeneCards (Weizmann)C2CD4C
Ensembl hg19 (Hinxton)ENSG00000183186 [Gene_View]  chr19:405443-409170 [Contig_View]  C2CD4C [Vega]
Ensembl hg38 (Hinxton)ENSG00000183186 [Gene_View]  chr19:405443-409170 [Contig_View]  C2CD4C [Vega]
ICGC DataPortalENSG00000183186
TCGA cBioPortalC2CD4C
AceView (NCBI)C2CD4C
Genatlas (Paris)C2CD4C
WikiGenes126567
SOURCE (Princeton)C2CD4C
Genetics Home Reference (NIH)C2CD4C
Genomic and cartography
GoldenPath hg19 (UCSC)C2CD4C  -     chr19:405443-409170 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2CD4C  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblC2CD4C - 19p13.3 [CytoView hg19]  C2CD4C - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIC2CD4C [Mapview hg19]  C2CD4C [Mapview hg38]
OMIM610336   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001136263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD4C
Cluster EST : UnigeneHs.223770 [ NCBI ]
CGAP (NCI)Hs.223770
Alternative Splicing GalleryENSG00000183186
Gene ExpressionC2CD4C [ NCBI-GEO ]   C2CD4C [ EBI - ARRAY_EXPRESS ]   C2CD4C [ SEEK ]   C2CD4C [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD4C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126567
GTEX Portal (Tissue expression)C2CD4C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF44
Splice isoforms : SwissVarQ8TF44
PhosPhoSitePlusQ8TF44
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    C2CD4   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)C2CD4C
DMDM Disease mutations126567
Blocks (Seattle)C2CD4C
SuperfamilyQ8TF44
Human Protein AtlasENSG00000183186
Peptide AtlasQ8TF44
IPIIPI00739203   IPI00745028   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF44
IntAct (EBI)Q8TF44
FunCoupENSG00000183186
BioGRIDC2CD4C
STRING (EMBL)C2CD4C
ZODIACC2CD4C
Ontologies - Pathways
QuickGOQ8TF44
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
NDEx NetworkC2CD4C
Atlas of Cancer Signalling NetworkC2CD4C
Wikipedia pathwaysC2CD4C
Orthology - Evolution
OrthoDB126567
GeneTree (enSembl)ENSG00000183186
Phylogenetic Trees/Animal Genes : TreeFamC2CD4C
HOVERGENQ8TF44
HOGENOMQ8TF44
Homologs : HomoloGeneC2CD4C
Homology/Alignments : Family Browser (UCSC)C2CD4C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD4C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD4C
dbVarC2CD4C
ClinVarC2CD4C
1000_GenomesC2CD4C 
Exome Variant ServerC2CD4C
ExAC (Exome Aggregation Consortium)C2CD4C (select the gene name)
Genetic variants : HAPMAP126567
Genomic Variants (DGV)C2CD4C [DGVbeta]
DECIPHER (Syndromes)19:405443-409170  ENSG00000183186
CONAN: Copy Number AnalysisC2CD4C 
Mutations
ICGC Data PortalC2CD4C 
TCGA Data PortalC2CD4C 
Broad Tumor PortalC2CD4C
OASIS PortalC2CD4C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD4C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2CD4C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD4C
DgiDB (Drug Gene Interaction Database)C2CD4C
DoCM (Curated mutations)C2CD4C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD4C (select a term)
intoGenC2CD4C
Cancer3DC2CD4C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610336   
Orphanet
MedgenC2CD4C
Genetic Testing Registry C2CD4C
NextProtQ8TF44 [Medical]
TSGene126567
GENETestsC2CD4C
Huge Navigator C2CD4C [HugePedia]
snp3D : Map Gene to Disease126567
BioCentury BCIQC2CD4C
ClinGenC2CD4C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126567
Chemical/Pharm GKB GenePA165393218
Clinical trialC2CD4C
Miscellaneous
canSAR (ICR)C2CD4C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD4C
EVEXC2CD4C
GoPubMedC2CD4C
iHOPC2CD4C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:12 CET 2017

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