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C2CD4D (C2 calcium dependent domain containing 4D)

Identity

Alias_namesmember D
Alias_symbol (synonym)FAM148D
Other alias
HGNC (Hugo) C2CD4D
LocusID (NCBI) 100191040
Atlas_Id 56138
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151837863 and ends at 151840557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD4D   37210
Cards
Entrez_Gene (NCBI)C2CD4D  100191040  C2 calcium dependent domain containing 4D
AliasesFAM148D
GeneCards (Weizmann)C2CD4D
Ensembl hg19 (Hinxton)ENSG00000225556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225556 [Gene_View]  ENSG00000225556 [Sequence]  chr1:151837863-151840557 [Contig_View]  C2CD4D [Vega]
ICGC DataPortalENSG00000225556
TCGA cBioPortalC2CD4D
AceView (NCBI)C2CD4D
Genatlas (Paris)C2CD4D
WikiGenes100191040
SOURCE (Princeton)C2CD4D
Genetics Home Reference (NIH)C2CD4D
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD4D  -     chr1:151837863-151840557 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD4D  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblC2CD4D - 1q21.3 [CytoView hg19]  C2CD4D - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIC2CD4D [Mapview hg19]  C2CD4D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293673 BC157847 BC171843 DC305608
RefSeq transcript (Entrez)NM_001136003
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD4D
Cluster EST : UnigeneHs.694717 [ NCBI ]
CGAP (NCI)Hs.694717
Alternative Splicing GalleryENSG00000225556
Gene ExpressionC2CD4D [ NCBI-GEO ]   C2CD4D [ EBI - ARRAY_EXPRESS ]   C2CD4D [ SEEK ]   C2CD4D [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD4D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100191040
GTEX Portal (Tissue expression)C2CD4D
Human Protein AtlasENSG00000225556-C2CD4D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB7Z1M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB7Z1M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB7Z1M9
Splice isoforms : SwissVarB7Z1M9
PhosPhoSitePlusB7Z1M9
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)C2CD4D
DMDM Disease mutations100191040
Blocks (Seattle)C2CD4D
SuperfamilyB7Z1M9
Human Protein Atlas [tissue]ENSG00000225556-C2CD4D [tissue]
Peptide AtlasB7Z1M9
IPIIPI00896453   
Protein Interaction databases
DIP (DOE-UCLA)B7Z1M9
IntAct (EBI)B7Z1M9
FunCoupENSG00000225556
BioGRIDC2CD4D
STRING (EMBL)C2CD4D
ZODIACC2CD4D
Ontologies - Pathways
QuickGOB7Z1M9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2CD4D
Atlas of Cancer Signalling NetworkC2CD4D
Wikipedia pathwaysC2CD4D
Orthology - Evolution
OrthoDB100191040
GeneTree (enSembl)ENSG00000225556
Phylogenetic Trees/Animal Genes : TreeFamC2CD4D
HOVERGENB7Z1M9
HOGENOMB7Z1M9
Homologs : HomoloGeneC2CD4D
Homology/Alignments : Family Browser (UCSC)C2CD4D
Gene fusions - Rearrangements
Fusion : QuiverC2CD4D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD4D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD4D
dbVarC2CD4D
ClinVarC2CD4D
1000_GenomesC2CD4D 
Exome Variant ServerC2CD4D
ExAC (Exome Aggregation Consortium)ENSG00000225556
GNOMAD BrowserENSG00000225556
Varsome BrowserC2CD4D
Genetic variants : HAPMAP100191040
Genomic Variants (DGV)C2CD4D [DGVbeta]
DECIPHERC2CD4D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD4D 
Mutations
ICGC Data PortalC2CD4D 
TCGA Data PortalC2CD4D 
Broad Tumor PortalC2CD4D
OASIS PortalC2CD4D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2CD4D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2CD4D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD4D
DgiDB (Drug Gene Interaction Database)C2CD4D
DoCM (Curated mutations)C2CD4D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD4D (select a term)
intoGenC2CD4D
Cancer3DC2CD4D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC2CD4D
MedgenC2CD4D
Genetic Testing Registry C2CD4D
NextProtB7Z1M9 [Medical]
TSGene100191040
GENETestsC2CD4D
Target ValidationC2CD4D
Huge Navigator C2CD4D [HugePedia]
snp3D : Map Gene to Disease100191040
BioCentury BCIQC2CD4D
ClinGenC2CD4D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100191040
Chemical/Pharm GKB GenePA165750504
Clinical trialC2CD4D
Miscellaneous
canSAR (ICR)C2CD4D (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD4D
EVEXC2CD4D
GoPubMedC2CD4D
iHOPC2CD4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:55:00 CET 2018

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