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C2CD6 (C2 calcium dependent domain containing 6)

Identity

Alias_namesALS2CR11
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11
amyotrophic lateral sclerosis 2 chromosome region candidate 11
Alias_symbol (synonym)FLJ25351
Other alias
HGNC (Hugo) C2CD6
LocusID (NCBI) 151254
Atlas_Id 79510
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 201487421 and ends at 201619182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2CD6   14438
Cards
Entrez_Gene (NCBI)C2CD6  151254  C2 calcium dependent domain containing 6
AliasesALS2CR11
GeneCards (Weizmann)C2CD6
Ensembl hg19 (Hinxton)ENSG00000155754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155754 [Gene_View]  chr2:201487421-201619182 [Contig_View]  C2CD6 [Vega]
ICGC DataPortalENSG00000155754
TCGA cBioPortalC2CD6
AceView (NCBI)C2CD6
Genatlas (Paris)C2CD6
WikiGenes151254
SOURCE (Princeton)C2CD6
Genetics Home Reference (NIH)C2CD6
Genomic and cartography
GoldenPath hg38 (UCSC)C2CD6  -     chr2:201487421-201619182 -  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2CD6  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblC2CD6 - 2q33.1 [CytoView hg19]  C2CD6 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIC2CD6 [Mapview hg19]  C2CD6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB053313 AI754862 AK058080 AK097651 AL833429
RefSeq transcript (Entrez)NM_001168216 NM_001168217 NM_001168221 NM_152525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2CD6
Cluster EST : UnigeneHs.335788 [ NCBI ]
CGAP (NCI)Hs.335788
Alternative Splicing GalleryENSG00000155754
Gene ExpressionC2CD6 [ NCBI-GEO ]   C2CD6 [ EBI - ARRAY_EXPRESS ]   C2CD6 [ SEEK ]   C2CD6 [ MEM ]
Gene Expression Viewer (FireBrowse)C2CD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151254
GTEX Portal (Tissue expression)C2CD6
Human Protein AtlasENSG00000155754-C2CD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53TS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53TS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53TS8
Splice isoforms : SwissVarQ53TS8
PhosPhoSitePlusQ53TS8
Domains : Interpro (EBI)ALS2CR11    C2_dom   
Domain families : Pfam (Sanger)ALS2CR11 (PF15729)   
Domain families : Pfam (NCBI)pfam15729   
Conserved Domain (NCBI)C2CD6
DMDM Disease mutations151254
Blocks (Seattle)C2CD6
SuperfamilyQ53TS8
Human Protein Atlas [tissue]ENSG00000155754-C2CD6 [tissue]
Peptide AtlasQ53TS8
IPIIPI00301617   IPI00044667   IPI00384662   IPI00927232   
Protein Interaction databases
DIP (DOE-UCLA)Q53TS8
IntAct (EBI)Q53TS8
FunCoupENSG00000155754
BioGRIDC2CD6
STRING (EMBL)C2CD6
ZODIACC2CD6
Ontologies - Pathways
QuickGOQ53TS8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC2CD6
Atlas of Cancer Signalling NetworkC2CD6
Wikipedia pathwaysC2CD6
Orthology - Evolution
OrthoDB151254
GeneTree (enSembl)ENSG00000155754
Phylogenetic Trees/Animal Genes : TreeFamC2CD6
HOVERGENQ53TS8
HOGENOMQ53TS8
Homologs : HomoloGeneC2CD6
Homology/Alignments : Family Browser (UCSC)C2CD6
Gene fusions - Rearrangements
Tumor Fusion PortalC2CD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2CD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2CD6
dbVarC2CD6
ClinVarC2CD6
1000_GenomesC2CD6 
Exome Variant ServerC2CD6
ExAC (Exome Aggregation Consortium)ENSG00000155754
GNOMAD BrowserENSG00000155754
Genetic variants : HAPMAP151254
Genomic Variants (DGV)C2CD6 [DGVbeta]
DECIPHERC2CD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2CD6 
Mutations
ICGC Data PortalC2CD6 
TCGA Data PortalC2CD6 
Broad Tumor PortalC2CD6
OASIS PortalC2CD6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC2CD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2CD6
DgiDB (Drug Gene Interaction Database)C2CD6
DoCM (Curated mutations)C2CD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2CD6 (select a term)
intoGenC2CD6
Cancer3DC2CD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC2CD6
MedgenC2CD6
Genetic Testing Registry C2CD6
NextProtQ53TS8 [Medical]
TSGene151254
GENETestsC2CD6
Target ValidationC2CD6
Huge Navigator C2CD6 [HugePedia]
snp3D : Map Gene to Disease151254
BioCentury BCIQC2CD6
ClinGenC2CD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151254
Chemical/Pharm GKB GenePA24734
Clinical trialC2CD6
Miscellaneous
canSAR (ICR)C2CD6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2CD6
EVEXC2CD6
GoPubMedC2CD6
iHOPC2CD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:00 CET 2017

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