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C2orf15 (chromosome 2 open reading frame 15)

Identity

Alias_symbol (synonym)MGC29762
Other alias-
HGNC (Hugo) C2orf15
LocusID (NCBI) 150590
Atlas_Id 61148
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 99141613 and ends at 99151465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf15   28436
Cards
Entrez_Gene (NCBI)C2orf15  150590  chromosome 2 open reading frame 15
Aliases
GeneCards (Weizmann)C2orf15
Ensembl hg19 (Hinxton)ENSG00000273045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273045 [Gene_View]  chr2:99141613-99151465 [Contig_View]  C2orf15 [Vega]
ICGC DataPortalENSG00000273045
TCGA cBioPortalC2orf15
AceView (NCBI)C2orf15
Genatlas (Paris)C2orf15
WikiGenes150590
SOURCE (Princeton)C2orf15
Genetics Home Reference (NIH)C2orf15
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf15  -     chr2:99141613-99151465 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf15  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblC2orf15 - 2q11.2 [CytoView hg19]  C2orf15 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIC2orf15 [Mapview hg19]  C2orf15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA653513 AK314133 BC021264 BX364103 DA396675
RefSeq transcript (Entrez)NM_001317992 NM_144706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf15
Cluster EST : UnigeneHs.352211 [ NCBI ]
CGAP (NCI)Hs.352211
Alternative Splicing GalleryENSG00000273045
Gene ExpressionC2orf15 [ NCBI-GEO ]   C2orf15 [ EBI - ARRAY_EXPRESS ]   C2orf15 [ SEEK ]   C2orf15 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150590
GTEX Portal (Tissue expression)C2orf15
Human Protein AtlasENSG00000273045-C2orf15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU43
Splice isoforms : SwissVarQ8WU43
PhosPhoSitePlusQ8WU43
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf15
DMDM Disease mutations150590
Blocks (Seattle)C2orf15
SuperfamilyQ8WU43
Human Protein Atlas [tissue]ENSG00000273045-C2orf15 [tissue]
Peptide AtlasQ8WU43
HPRD12806
IPIIPI00748207   IPI00465176   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU43
IntAct (EBI)Q8WU43
FunCoupENSG00000273045
BioGRIDC2orf15
STRING (EMBL)C2orf15
ZODIACC2orf15
Ontologies - Pathways
QuickGOQ8WU43
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkC2orf15
Atlas of Cancer Signalling NetworkC2orf15
Wikipedia pathwaysC2orf15
Orthology - Evolution
OrthoDB150590
GeneTree (enSembl)ENSG00000273045
Phylogenetic Trees/Animal Genes : TreeFamC2orf15
HOVERGENQ8WU43
HOGENOMQ8WU43
Homologs : HomoloGeneC2orf15
Homology/Alignments : Family Browser (UCSC)C2orf15
Gene fusions - Rearrangements
Fusion: Tumor Portal C2orf15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf15
dbVarC2orf15
ClinVarC2orf15
1000_GenomesC2orf15 
Exome Variant ServerC2orf15
ExAC (Exome Aggregation Consortium)ENSG00000273045
GNOMAD BrowserENSG00000273045
Genetic variants : HAPMAP150590
Genomic Variants (DGV)C2orf15 [DGVbeta]
DECIPHERC2orf15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf15 
Mutations
ICGC Data PortalC2orf15 
TCGA Data PortalC2orf15 
Broad Tumor PortalC2orf15
OASIS PortalC2orf15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C2orf15
DgiDB (Drug Gene Interaction Database)C2orf15
DoCM (Curated mutations)C2orf15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf15 (select a term)
intoGenC2orf15
Cancer3DC2orf15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf15
Genetic Testing Registry C2orf15
NextProtQ8WU43 [Medical]
TSGene150590
GENETestsC2orf15
Target ValidationC2orf15
Huge Navigator C2orf15 [HugePedia]
snp3D : Map Gene to Disease150590
BioCentury BCIQC2orf15
ClinGenC2orf15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150590
Chemical/Pharm GKB GenePA134861678
Clinical trialC2orf15
Miscellaneous
canSAR (ICR)C2orf15 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf15
EVEXC2orf15
GoPubMedC2orf15
iHOPC2orf15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:24 CET 2017

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