Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C2orf16 (chromosome 2 open reading frame 16)

Identity

Alias_symbol (synonym)DKFZp434G118
Other alias-
HGNC (Hugo) C2orf16
LocusID (NCBI) 84226
Atlas_Id 61149
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27576522 and ends at 27582722 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf16   25275
Cards
Entrez_Gene (NCBI)C2orf16  84226  chromosome 2 open reading frame 16
Aliases
GeneCards (Weizmann)C2orf16
Ensembl hg19 (Hinxton)ENSG00000221843 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221843 [Gene_View]  chr2:27576522-27582722 [Contig_View]  C2orf16 [Vega]
ICGC DataPortalENSG00000221843
TCGA cBioPortalC2orf16
AceView (NCBI)C2orf16
Genatlas (Paris)C2orf16
WikiGenes84226
SOURCE (Princeton)C2orf16
Genetics Home Reference (NIH)C2orf16
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf16  -     chr2:27576522-27582722 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf16  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblC2orf16 - 2p23.3 [CytoView hg19]  C2orf16 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIC2orf16 [Mapview hg19]  C2orf16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL136898 AL834384 BC115376 BC115377 BC140828
RefSeq transcript (Entrez)NM_032266
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf16
Cluster EST : UnigeneHs.131021 [ NCBI ]
CGAP (NCI)Hs.131021
Alternative Splicing GalleryENSG00000221843
Gene ExpressionC2orf16 [ NCBI-GEO ]   C2orf16 [ EBI - ARRAY_EXPRESS ]   C2orf16 [ SEEK ]   C2orf16 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84226
GTEX Portal (Tissue expression)C2orf16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DN1
Splice isoforms : SwissVarQ68DN1
PhosPhoSitePlusQ68DN1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf16
DMDM Disease mutations84226
Blocks (Seattle)C2orf16
SuperfamilyQ68DN1
Human Protein AtlasENSG00000221843
Peptide AtlasQ68DN1
HPRD09849
IPIIPI00470912   
Protein Interaction databases
DIP (DOE-UCLA)Q68DN1
IntAct (EBI)Q68DN1
FunCoupENSG00000221843
BioGRIDC2orf16
STRING (EMBL)C2orf16
ZODIACC2orf16
Ontologies - Pathways
QuickGOQ68DN1
Ontology : AmiGOnucleus  extracellular exosome  
Ontology : EGO-EBInucleus  extracellular exosome  
NDEx NetworkC2orf16
Atlas of Cancer Signalling NetworkC2orf16
Wikipedia pathwaysC2orf16
Orthology - Evolution
OrthoDB84226
GeneTree (enSembl)ENSG00000221843
Phylogenetic Trees/Animal Genes : TreeFamC2orf16
HOVERGENQ68DN1
HOGENOMQ68DN1
Homologs : HomoloGeneC2orf16
Homology/Alignments : Family Browser (UCSC)C2orf16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf16
dbVarC2orf16
ClinVarC2orf16
1000_GenomesC2orf16 
Exome Variant ServerC2orf16
ExAC (Exome Aggregation Consortium)C2orf16 (select the gene name)
Genetic variants : HAPMAP84226
Genomic Variants (DGV)C2orf16 [DGVbeta]
DECIPHERC2orf16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf16 
Mutations
ICGC Data PortalC2orf16 
TCGA Data PortalC2orf16 
Broad Tumor PortalC2orf16
OASIS PortalC2orf16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf16
DgiDB (Drug Gene Interaction Database)C2orf16
DoCM (Curated mutations)C2orf16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf16 (select a term)
intoGenC2orf16
Cancer3DC2orf16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf16
Genetic Testing Registry C2orf16
NextProtQ68DN1 [Medical]
TSGene84226
GENETestsC2orf16
Target ValidationC2orf16
Huge Navigator C2orf16 [HugePedia]
snp3D : Map Gene to Disease84226
BioCentury BCIQC2orf16
ClinGenC2orf16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84226
Chemical/Pharm GKB GenePA134977296
Clinical trialC2orf16
Miscellaneous
canSAR (ICR)C2orf16 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf16
EVEXC2orf16
GoPubMedC2orf16
iHOPC2orf16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:14 CEST 2017

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