Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C2orf27A (chromosome 2 open reading frame 27A)

Identity

Alias_namesC2orf27
chromosome 2 open reading frame 27
Other aliasC2orf27B
HGNC (Hugo) C2orf27A
LocusID (NCBI) 29798
Atlas_Id 61150
Location 2q21.2  [Link to chromosome band 2q21]
Location_base_pair Starts at 131722491 and ends at 131767404 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf27A   25077
Cards
Entrez_Gene (NCBI)C2orf27A  29798  chromosome 2 open reading frame 27A
AliasesC2orf27; C2orf27B
GeneCards (Weizmann)C2orf27A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:131722491-131767404 [Contig_View]  C2orf27A [Vega]
TCGA cBioPortalC2orf27A
AceView (NCBI)C2orf27A
Genatlas (Paris)C2orf27A
WikiGenes29798
SOURCE (Princeton)C2orf27A
Genetics Home Reference (NIH)C2orf27A
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf27A  -     chr2:131722491-131767404 +  2q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf27A  -     2q21.2   [Description]    (hg19-Feb_2009)
EnsemblC2orf27A - 2q21.2 [CytoView hg19]  C2orf27A - 2q21.2 [CytoView hg38]
Mapping of homologs : NCBIC2orf27A [Mapview hg19]  C2orf27A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF038169 AI302788 AI418663 AK309649 BC071972
RefSeq transcript (Entrez)NM_013310
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_187528
Consensus coding sequences : CCDS (NCBI)C2orf27A
Cluster EST : UnigeneHs.655680 [ NCBI ]
CGAP (NCI)Hs.655680
Gene ExpressionC2orf27A [ NCBI-GEO ]   C2orf27A [ EBI - ARRAY_EXPRESS ]   C2orf27A [ SEEK ]   C2orf27A [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf27A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29798
GTEX Portal (Tissue expression)C2orf27A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ580R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ580R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ580R0
Splice isoforms : SwissVarQ580R0
PhosPhoSitePlusQ580R0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf27A
DMDM Disease mutations29798
Blocks (Seattle)C2orf27A
SuperfamilyQ580R0
Peptide AtlasQ580R0
HPRD12811
Protein Interaction databases
DIP (DOE-UCLA)Q580R0
IntAct (EBI)Q580R0
BioGRIDC2orf27A
STRING (EMBL)C2orf27A
ZODIACC2orf27A
Ontologies - Pathways
QuickGOQ580R0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2orf27A
Atlas of Cancer Signalling NetworkC2orf27A
Wikipedia pathwaysC2orf27A
Orthology - Evolution
OrthoDB29798
Phylogenetic Trees/Animal Genes : TreeFamC2orf27A
HOVERGENQ580R0
HOGENOMQ580R0
Homologs : HomoloGeneC2orf27A
Homology/Alignments : Family Browser (UCSC)C2orf27A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf27A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf27A
dbVarC2orf27A
ClinVarC2orf27A
1000_GenomesC2orf27A 
Exome Variant ServerC2orf27A
ExAC (Exome Aggregation Consortium)C2orf27A (select the gene name)
Genetic variants : HAPMAP29798
Genomic Variants (DGV)C2orf27A [DGVbeta]
DECIPHERC2orf27A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf27A 
Mutations
ICGC Data PortalC2orf27A 
TCGA Data PortalC2orf27A 
Broad Tumor PortalC2orf27A
OASIS PortalC2orf27A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf27A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf27A
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch C2orf27A
DgiDB (Drug Gene Interaction Database)C2orf27A
DoCM (Curated mutations)C2orf27A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf27A (select a term)
intoGenC2orf27A
Cancer3DC2orf27A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf27A
Genetic Testing Registry C2orf27A
NextProtQ580R0 [Medical]
TSGene29798
GENETestsC2orf27A
Target ValidationC2orf27A
Huge Navigator C2orf27A [HugePedia]
snp3D : Map Gene to Disease29798
BioCentury BCIQC2orf27A
ClinGenC2orf27A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29798
Chemical/Pharm GKB GenePA164717121
Clinical trialC2orf27A
Miscellaneous
canSAR (ICR)C2orf27A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf27A
EVEXC2orf27A
GoPubMedC2orf27A
iHOPC2orf27A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:07 CEST 2017

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