Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C2orf27B (chromosome 2 open reading frame 27B)

Identity

Alias_symbol (synonym)MGC50273
Other alias-
HGNC (Hugo) C2orf27B
LocusID (NCBI) 408029
Atlas_Id 61151
Location 2q21.2  [Link to chromosome band 2q21]
Location_base_pair Starts at 131794961 and ends at 131801661 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf27B   33824
Cards
Entrez_Gene (NCBI)C2orf27B  408029  chromosome 2 open reading frame 27B
Aliases
GeneCards (Weizmann)C2orf27B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:131794961-131801661 [Contig_View]  C2orf27B [Vega]
TCGA cBioPortalC2orf27B
AceView (NCBI)C2orf27B
Genatlas (Paris)C2orf27B
WikiGenes408029
SOURCE (Princeton)C2orf27B
Genetics Home Reference (NIH)C2orf27B
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf27B  -     chr2:131794961-131801661 -  2q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf27B  -     2q21.2   [Description]    (hg19-Feb_2009)
EnsemblC2orf27B - 2q21.2 [CytoView hg19]  C2orf27B - 2q21.2 [CytoView hg38]
Mapping of homologs : NCBIC2orf27B [Mapview hg19]  C2orf27B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043584 DB334481 HQ448636
RefSeq transcript (Entrez)NM_214461
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_187528
Consensus coding sequences : CCDS (NCBI)C2orf27B
Cluster EST : UnigeneHs.655680 [ NCBI ]
CGAP (NCI)Hs.655680
Gene ExpressionC2orf27B [ NCBI-GEO ]   C2orf27B [ EBI - ARRAY_EXPRESS ]   C2orf27B [ SEEK ]   C2orf27B [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf27B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)408029
GTEX Portal (Tissue expression)C2orf27B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ580R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ580R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ580R0
Splice isoforms : SwissVarQ580R0
PhosPhoSitePlusQ580R0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf27B
DMDM Disease mutations408029
Blocks (Seattle)C2orf27B
SuperfamilyQ580R0
Peptide AtlasQ580R0
HPRD14664
IPIIPI00604591   IPI00384553   IPI00787169   
Protein Interaction databases
DIP (DOE-UCLA)Q580R0
IntAct (EBI)Q580R0
BioGRIDC2orf27B
STRING (EMBL)C2orf27B
ZODIACC2orf27B
Ontologies - Pathways
QuickGOQ580R0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2orf27B
Atlas of Cancer Signalling NetworkC2orf27B
Wikipedia pathwaysC2orf27B
Orthology - Evolution
OrthoDB408029
Phylogenetic Trees/Animal Genes : TreeFamC2orf27B
HOVERGENQ580R0
HOGENOMQ580R0
Homologs : HomoloGeneC2orf27B
Homology/Alignments : Family Browser (UCSC)C2orf27B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf27B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf27B
dbVarC2orf27B
ClinVarC2orf27B
1000_GenomesC2orf27B 
Exome Variant ServerC2orf27B
ExAC (Exome Aggregation Consortium)C2orf27B (select the gene name)
Genetic variants : HAPMAP408029
Genomic Variants (DGV)C2orf27B [DGVbeta]
DECIPHERC2orf27B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf27B 
Mutations
ICGC Data PortalC2orf27B 
TCGA Data PortalC2orf27B 
Broad Tumor PortalC2orf27B
OASIS PortalC2orf27B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf27B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf27B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf27B
DgiDB (Drug Gene Interaction Database)C2orf27B
DoCM (Curated mutations)C2orf27B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf27B (select a term)
intoGenC2orf27B
Cancer3DC2orf27B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf27B
Genetic Testing Registry C2orf27B
NextProtQ580R0 [Medical]
TSGene408029
GENETestsC2orf27B
Target ValidationC2orf27B
Huge Navigator C2orf27B [HugePedia]
snp3D : Map Gene to Disease408029
BioCentury BCIQC2orf27B
ClinGenC2orf27B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD408029
Chemical/Pharm GKB GenePA164717134
Clinical trialC2orf27B
Miscellaneous
canSAR (ICR)C2orf27B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf27B
EVEXC2orf27B
GoPubMedC2orf27B
iHOPC2orf27B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:15 CEST 2017

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