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C2orf40 (chromosome 2 open reading frame 40)

Identity

Alias_symbol (synonym)ECRG4
augurin
Other alias
HGNC (Hugo) C2orf40
LocusID (NCBI) 84417
Atlas_Id 40399
Location 2q12.2  [Link to chromosome band 2q12]
Location_base_pair Starts at 106065657 and ends at 106078153 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf40   24642
Cards
Entrez_Gene (NCBI)C2orf40  84417  chromosome 2 open reading frame 40
AliasesECRG4
GeneCards (Weizmann)C2orf40
Ensembl hg19 (Hinxton)ENSG00000119147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119147 [Gene_View]  chr2:106065657-106078153 [Contig_View]  C2orf40 [Vega]
ICGC DataPortalENSG00000119147
TCGA cBioPortalC2orf40
AceView (NCBI)C2orf40
Genatlas (Paris)C2orf40
WikiGenes84417
SOURCE (Princeton)C2orf40
Genetics Home Reference (NIH)C2orf40
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf40  -     chr2:106065657-106078153 +  2q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf40  -     2q12.2   [Description]    (hg19-Feb_2009)
EnsemblC2orf40 - 2q12.2 [CytoView hg19]  C2orf40 - 2q12.2 [CytoView hg38]
Mapping of homologs : NCBIC2orf40 [Mapview hg19]  C2orf40 [Mapview hg38]
OMIM611752   
Gene and transcription
Genbank (Entrez)AF325503 AY358601 BC021742 DQ892412 DQ895626
RefSeq transcript (Entrez)NM_032411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf40
Cluster EST : UnigeneHs.43125 [ NCBI ]
CGAP (NCI)Hs.43125
Alternative Splicing GalleryENSG00000119147
Gene ExpressionC2orf40 [ NCBI-GEO ]   C2orf40 [ EBI - ARRAY_EXPRESS ]   C2orf40 [ SEEK ]   C2orf40 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84417
GTEX Portal (Tissue expression)C2orf40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Z8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Z8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Z8
Splice isoforms : SwissVarQ9H1Z8
PhosPhoSitePlusQ9H1Z8
Domains : Interpro (EBI)Augurin   
Domain families : Pfam (Sanger)Augurin (PF15187)   
Domain families : Pfam (NCBI)pfam15187   
Conserved Domain (NCBI)C2orf40
DMDM Disease mutations84417
Blocks (Seattle)C2orf40
SuperfamilyQ9H1Z8
Human Protein AtlasENSG00000119147
Peptide AtlasQ9H1Z8
HPRD13261
IPIIPI00031769   IPI00917182   IPI00917326   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Z8
IntAct (EBI)Q9H1Z8
FunCoupENSG00000119147
BioGRIDC2orf40
STRING (EMBL)C2orf40
ZODIACC2orf40
Ontologies - Pathways
QuickGOQ9H1Z8
Ontology : AmiGOextracellular space  transport vesicle  anaphase-promoting complex-dependent catabolic process  G1 to G0 transition  cellular senescence  
Ontology : EGO-EBIextracellular space  transport vesicle  anaphase-promoting complex-dependent catabolic process  G1 to G0 transition  cellular senescence  
NDEx NetworkC2orf40
Atlas of Cancer Signalling NetworkC2orf40
Wikipedia pathwaysC2orf40
Orthology - Evolution
OrthoDB84417
GeneTree (enSembl)ENSG00000119147
Phylogenetic Trees/Animal Genes : TreeFamC2orf40
HOVERGENQ9H1Z8
HOGENOMQ9H1Z8
Homologs : HomoloGeneC2orf40
Homology/Alignments : Family Browser (UCSC)C2orf40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf40
dbVarC2orf40
ClinVarC2orf40
1000_GenomesC2orf40 
Exome Variant ServerC2orf40
ExAC (Exome Aggregation Consortium)C2orf40 (select the gene name)
Genetic variants : HAPMAP84417
Genomic Variants (DGV)C2orf40 [DGVbeta]
DECIPHERC2orf40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf40 
Mutations
ICGC Data PortalC2orf40 
TCGA Data PortalC2orf40 
Broad Tumor PortalC2orf40
OASIS PortalC2orf40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf40
DgiDB (Drug Gene Interaction Database)C2orf40
DoCM (Curated mutations)C2orf40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf40 (select a term)
intoGenC2orf40
Cancer3DC2orf40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611752   
Orphanet
MedgenC2orf40
Genetic Testing Registry C2orf40
NextProtQ9H1Z8 [Medical]
TSGene84417
GENETestsC2orf40
Huge Navigator C2orf40 [HugePedia]
snp3D : Map Gene to Disease84417
BioCentury BCIQC2orf40
ClinGenC2orf40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84417
Chemical/Pharm GKB GenePA147358728
Clinical trialC2orf40
Miscellaneous
canSAR (ICR)C2orf40 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf40
EVEXC2orf40
GoPubMedC2orf40
iHOPC2orf40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:08:24 CEST 2017

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