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C2orf42 (chromosome 2 open reading frame 42)

Identity

Alias_symbol (synonym)FLJ20558
Other alias-
HGNC (Hugo) C2orf42
LocusID (NCBI) 54980
Atlas_Id 61152
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70149880 and ends at 70190711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AAK1 (2p13.3) / C2orf42 (2p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf42   26056
Cards
Entrez_Gene (NCBI)C2orf42  54980  chromosome 2 open reading frame 42
Aliases
GeneCards (Weizmann)C2orf42
Ensembl hg19 (Hinxton)ENSG00000115998 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115998 [Gene_View]  chr2:70149880-70190711 [Contig_View]  C2orf42 [Vega]
ICGC DataPortalENSG00000115998
TCGA cBioPortalC2orf42
AceView (NCBI)C2orf42
Genatlas (Paris)C2orf42
WikiGenes54980
SOURCE (Princeton)C2orf42
Genetics Home Reference (NIH)C2orf42
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf42  -     chr2:70149880-70190711 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf42  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblC2orf42 - 2p13.3 [CytoView hg19]  C2orf42 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIC2orf42 [Mapview hg19]  C2orf42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA713598 AK000565 AK026303 AL136834 BC002825
RefSeq transcript (Entrez)NM_001348758 NM_001348759 NM_001348760 NM_001348761 NM_001348762 NM_001348763 NM_001348764 NM_017880
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf42
Cluster EST : UnigeneHs.720049 [ NCBI ]
CGAP (NCI)Hs.720049
Alternative Splicing GalleryENSG00000115998
Gene ExpressionC2orf42 [ NCBI-GEO ]   C2orf42 [ EBI - ARRAY_EXPRESS ]   C2orf42 [ SEEK ]   C2orf42 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54980
GTEX Portal (Tissue expression)C2orf42
Human Protein AtlasENSG00000115998-C2orf42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWW7
Splice isoforms : SwissVarQ9NWW7
PhosPhoSitePlusQ9NWW7
Domains : Interpro (EBI)C2orf42    Zf-tcix   
Domain families : Pfam (Sanger)zf-tcix (PF14952)   
Domain families : Pfam (NCBI)pfam14952   
Conserved Domain (NCBI)C2orf42
DMDM Disease mutations54980
Blocks (Seattle)C2orf42
SuperfamilyQ9NWW7
Human Protein Atlas [tissue]ENSG00000115998-C2orf42 [tissue]
Peptide AtlasQ9NWW7
HPRD07927
IPIIPI00016594   IPI00925676   IPI00925017   IPI00926102   IPI00925402   IPI00927586   IPI00927829   IPI00925222   IPI00924734   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWW7
IntAct (EBI)Q9NWW7
FunCoupENSG00000115998
BioGRIDC2orf42
STRING (EMBL)C2orf42
ZODIACC2orf42
Ontologies - Pathways
QuickGOQ9NWW7
Ontology : AmiGOprotein binding  nucleus  nuclear membrane  
Ontology : EGO-EBIprotein binding  nucleus  nuclear membrane  
NDEx NetworkC2orf42
Atlas of Cancer Signalling NetworkC2orf42
Wikipedia pathwaysC2orf42
Orthology - Evolution
OrthoDB54980
GeneTree (enSembl)ENSG00000115998
Phylogenetic Trees/Animal Genes : TreeFamC2orf42
HOVERGENQ9NWW7
HOGENOMQ9NWW7
Homologs : HomoloGeneC2orf42
Homology/Alignments : Family Browser (UCSC)C2orf42
Gene fusions - Rearrangements
Fusion: Tumor Portal C2orf42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf42
dbVarC2orf42
ClinVarC2orf42
1000_GenomesC2orf42 
Exome Variant ServerC2orf42
ExAC (Exome Aggregation Consortium)ENSG00000115998
GNOMAD BrowserENSG00000115998
Genetic variants : HAPMAP54980
Genomic Variants (DGV)C2orf42 [DGVbeta]
DECIPHERC2orf42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf42 
Mutations
ICGC Data PortalC2orf42 
TCGA Data PortalC2orf42 
Broad Tumor PortalC2orf42
OASIS PortalC2orf42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf42
DgiDB (Drug Gene Interaction Database)C2orf42
DoCM (Curated mutations)C2orf42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf42 (select a term)
intoGenC2orf42
Cancer3DC2orf42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf42
Genetic Testing Registry C2orf42
NextProtQ9NWW7 [Medical]
TSGene54980
GENETestsC2orf42
Target ValidationC2orf42
Huge Navigator C2orf42 [HugePedia]
snp3D : Map Gene to Disease54980
BioCentury BCIQC2orf42
ClinGenC2orf42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54980
Chemical/Pharm GKB GenePA147358740
Clinical trialC2orf42
Miscellaneous
canSAR (ICR)C2orf42 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf42
EVEXC2orf42
GoPubMedC2orf42
iHOPC2orf42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:25 CET 2017

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