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C2orf44 (chromosome 2 open reading frame 44)

Identity

Other aliasPP384
WDCP
HGNC (Hugo) C2orf44
LocusID (NCBI) 80304
Atlas_Id 52973
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24252206 and ends at 24270296 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASXL2 (2p23.3) / C2orf44 (2p23.3)C2orf44 (2p23.3) / ALK (2p23.2)C2orf44 ALK 2p23.2
ASXL2 2p23.3 / C2orf44 2p23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf44   26157
Cards
Entrez_Gene (NCBI)C2orf44  80304  chromosome 2 open reading frame 44
AliasesPP384; WDCP
GeneCards (Weizmann)C2orf44
Ensembl hg19 (Hinxton)ENSG00000163026 [Gene_View]  chr2:24252206-24270296 [Contig_View]  C2orf44 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163026 [Gene_View]  chr2:24252206-24270296 [Contig_View]  C2orf44 [Vega]
ICGC DataPortalENSG00000163026
TCGA cBioPortalC2orf44
AceView (NCBI)C2orf44
Genatlas (Paris)C2orf44
WikiGenes80304
SOURCE (Princeton)C2orf44
Genetics Home Reference (NIH)C2orf44
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf44  -     chr2:24252206-24270296 -  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf44  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblC2orf44 - 2p23.3 [CytoView hg19]  C2orf44 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIC2orf44 [Mapview hg19]  C2orf44 [Mapview hg38]
OMIM616234   
Gene and transcription
Genbank (Entrez)AF218013 AI800484 AK025598 BC035698 CX756689
RefSeq transcript (Entrez)NM_001142319 NM_025203
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)C2orf44
Cluster EST : UnigeneHs.24624 [ NCBI ]
CGAP (NCI)Hs.24624
Alternative Splicing GalleryENSG00000163026
Gene ExpressionC2orf44 [ NCBI-GEO ]   C2orf44 [ EBI - ARRAY_EXPRESS ]   C2orf44 [ SEEK ]   C2orf44 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80304
GTEX Portal (Tissue expression)C2orf44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6R7
Splice isoforms : SwissVarQ9H6R7
PhosPhoSitePlusQ9H6R7
Domains : Interpro (EBI)DUF4613   
Domain families : Pfam (Sanger)DUF4613 (PF15390)   
Domain families : Pfam (NCBI)pfam15390   
Conserved Domain (NCBI)C2orf44
DMDM Disease mutations80304
Blocks (Seattle)C2orf44
SuperfamilyQ9H6R7
Human Protein AtlasENSG00000163026
Peptide AtlasQ9H6R7
HPRD07972
IPIIPI00018786   IPI00855958   IPI00855990   IPI00892623   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6R7
IntAct (EBI)Q9H6R7
FunCoupENSG00000163026
BioGRIDC2orf44
STRING (EMBL)C2orf44
ZODIACC2orf44
Ontologies - Pathways
QuickGOQ9H6R7
Ontology : AmiGOkinase binding  protein oligomerization  
Ontology : EGO-EBIkinase binding  protein oligomerization  
NDEx NetworkC2orf44
Atlas of Cancer Signalling NetworkC2orf44
Wikipedia pathwaysC2orf44
Orthology - Evolution
OrthoDB80304
GeneTree (enSembl)ENSG00000163026
Phylogenetic Trees/Animal Genes : TreeFamC2orf44
HOVERGENQ9H6R7
HOGENOMQ9H6R7
Homologs : HomoloGeneC2orf44
Homology/Alignments : Family Browser (UCSC)C2orf44
Gene fusions - Rearrangements
Fusion : MitelmanASXL2/C2orf44 [2p23.3/2p23.3]  [t(2;2)(p23;p23)]  
Fusion : MitelmanC2orf44/ALK [2p23.3/2p23.2]  [dup(2)(p23p24)]  
Fusion: TCGAASXL2 2p23.3 C2orf44 2p23.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf44
dbVarC2orf44
ClinVarC2orf44
1000_GenomesC2orf44 
Exome Variant ServerC2orf44
ExAC (Exome Aggregation Consortium)C2orf44 (select the gene name)
Genetic variants : HAPMAP80304
Genomic Variants (DGV)C2orf44 [DGVbeta]
DECIPHER (Syndromes)2:24252206-24270296  ENSG00000163026
CONAN: Copy Number AnalysisC2orf44 
Mutations
ICGC Data PortalC2orf44 
TCGA Data PortalC2orf44 
Broad Tumor PortalC2orf44
OASIS PortalC2orf44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf44
DgiDB (Drug Gene Interaction Database)C2orf44
DoCM (Curated mutations)C2orf44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf44 (select a term)
intoGenC2orf44
Cancer3DC2orf44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616234   
Orphanet
MedgenC2orf44
Genetic Testing Registry C2orf44
NextProtQ9H6R7 [Medical]
TSGene80304
GENETestsC2orf44
Huge Navigator C2orf44 [HugePedia]
snp3D : Map Gene to Disease80304
BioCentury BCIQC2orf44
ClinGenC2orf44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80304
Chemical/Pharm GKB GenePA147358716
Clinical trialC2orf44
Miscellaneous
canSAR (ICR)C2orf44 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf44
EVEXC2orf44
GoPubMedC2orf44
iHOPC2orf44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:35 CEST 2017

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